RNA 3D Hub //

8FL0 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8FL0_0071/L3/1864:1870Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_8FL0_0081/L3/1886:1893No text annotation
geometric
HL_2A43_001
HL_86621.1
HL_8FL0_0091/L3/1978:1988No text annotation
homologous
HL_8C3A_027
NA
HL_8FL0_0101/L3/2006:2013GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8FL0_0121/L3/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_8FL0_0131/L3/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_8FL0_0141/L3/4270:4277No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_8FL0_0161/L3/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_8FL0_0291/L3/4474:4481GNRA variation
homologous
HL_8CRE_061
NA
HL_8FL0_0191/L3/4497:4503Mini UNCG related
geometric
HL_6AJK_001
HL_12626.2
HL_8FL0_0201/L3/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_8FL0_0211/L3/4603:4608GNRA
geometric
HL_5B2P_001
HL_34789.2
HL_8FL0_0221/L3/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_8FL0_0231/L3/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_8FL0_0241/L3/4975:4983No text annotation
geometric
HL_5TBW_070
NA
HL_8FL0_0281/L4/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8FL0_0261/L4/36:41No text annotation
geometric
HL_5TBW_185
NA

Problematic loops

#loop idProblemSequence
HL_8FL0_001No text annotation
HL_8FL0_002No text annotation
HL_8FL0_003No text annotation
HL_8FL0_004Externally structured
HL_8FL0_005No text annotation
HL_8FL0_006No text annotation
HL_8FL0_011Mini UNCG
HL_8FL0_015Mini UNCG
HL_8FL0_017No text annotation
HL_8FL0_018No text annotation
HL_8FL0_025No text annotation
HL_8FL0_027GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8FL0_0021/L3/462:464,
1/L3/691:693		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8FL0_0031/L3/466:472,
1/L3/682:689		No text annotation
IL_8FL0_0061/L3/709:710,
1/L3/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_8FL0_0071/L3/723:724,
1/L3/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8FL0_0081/L3/727:731,
1/L3/938:939		No text annotation
IL_8FL0_0091/L3/732:735,
1/L3/928:937		No text annotation
IL_8FL0_0101/L3/737:739,
1/L3/924:926		No text annotation
geometric
IL_5J7L_341
NA
IL_8FL0_0111/L3/740:742,
1/L3/922:923		Single bulged C
geometric
IL_3HHN_003
IL_05642.2
IL_8FL0_0121/L3/745:752,
1/L3/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_8FL0_0131/L3/1073:1074,
1/L3/1237:1239		Single bulged A
geometric
IL_2VPL_002
IL_14190.2
IL_8FL0_0161/L3/1086:1087,
1/L3/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_8FL0_0181/L3/1357:1360,
1/L3/1379:1382		No text annotation
IL_8FL0_0861/L3/1357:1361,
1/L3/1376:1382		No text annotation
IL_8FL0_0201/L3/1425:1429,
1/L3/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_8FL0_0211/L3/1431:1434,
1/L3/1450:1453		Double sheared
geometric
IL_1SA9_002
IL_58355.2
IL_8FL0_0231/L3/1686:1688,
1/L3/1848:1851		No text annotation
IL_8FL0_0251/L3/1723:1725,
1/L3/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_8FL0_0271/L3/1858:1860,
1/L3/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8FL0_0281/L3/1905:1909,
1/L3/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8FL0_0291/L3/1911:1918,
1/L3/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_8FL0_0301/L3/1918:1920,
1/L3/2063:2064		Single bulged G
geometric
IL_5TBW_037
NA
IL_8FL0_0311/L3/1920:1922,
1/L3/2062:2063		No text annotation
IL_8FL0_0321/L3/1926:1933,
1/L3/2053:2058		No text annotation
homologous
IL_8C3A_054
NA
IL_8FL0_0341/L3/1946:1948,
1/L3/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_8FL0_0351/L3/1957:1965,
1/L3/2022:2026		Kink-turn
homologous
IL_8C3A_057
NA
IL_8FL0_0361/L3/1973:1977,
1/L3/1989:1993		No text annotation
homologous
IL_8C3A_058
NA
IL_8FL0_0371/L3/2001:2005,
1/L3/2014:2016		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_8FL0_0381/L3/2083:2085,
1/L3/2272:2273		Single bulged C
geometric
IL_4C7O_003
IL_05642.2
IL_8FL0_0391/L3/2290:2292,
1/L3/2342:2345		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_8FL0_0401/L3/2299:2301,
1/L3/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_8FL0_0411/L3/2302:2309,
1/L3/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_8FL0_0421/L3/2312:2314,
1/L3/2325:2326		Single bulged A
geometric
IL_7RQB_033
NA
IL_8FL0_0441/L3/3916:3917,
1/L3/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8FL0_0891/L3/4201:4203,
1/L3/4229:4231		Isolated non-canonical cWW pair
geometric
IL_4KNQ_002
IL_01003.2
IL_8FL0_0481/L3/4243:4245,
1/L3/4263:4267		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_8FL0_0491/L3/4295:4298,
1/L3/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_8FL0_0501/L3/4412:4416,
1/L3/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_8FL0_0521/L3/4466:4468,
1/L3/4489:4491		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_8FL0_0881/L3/4466:4470,
1/L3/4485:4491		No text annotation
IL_8FL0_0531/L3/4468:4470,
1/L3/4485:4489		No text annotation
IL_8FL0_0541/L3/4495:4497,
1/L3/4503:4505		Isolated non-canonical cWW pair
geometric
IL_1KFO_002
NA
IL_8FL0_0551/L3/4537:4538,
1/L3/4547:4549		Minor groove platform
geometric
IL_7A0S_028
IL_34520.2
IL_8FL0_0561/L3/4580:4582,
1/L3/4721:4723		Isolated cWH basepair
geometric
IL_3R1C_031
NA
IL_8FL0_0571/L3/4582:4585,
1/L3/4717:4721		Other IL
geometric
IL_4WF9_054
IL_74317.1
IL_8FL0_0581/L3/4590:4592,
1/L3/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_8FL0_0591/L3/4596:4603,
1/L3/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_8FL0_0601/L3/4624:4629,
1/L3/4669:4673		No text annotation
IL_8FL0_0611/L3/4632:4637,
1/L3/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_8FL0_0621/L3/4638:4640,
1/L3/4659:4661		Isolated cWH basepair
geometric
IL_3SJ2_002
IL_10892.2
IL_8FL0_0631/L3/4681:4685,
1/L3/4705:4709		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8FL0_0641/L3/4739:4742,
1/L3/4958:4960		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8FL0_0651/L3/4743:4746,
1/L3/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_8FL0_0661/L3/4749:4751,
1/L3/4948:4951		No text annotation
IL_8FL0_0671/L3/4756:4765,
1/L3/4869:4877		No text annotation
IL_8FL0_0681/L3/4769:4771,
1/L3/4863:4865		Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_01003.2
IL_8FL0_0691/L3/4885:4889,
1/L3/4930:4934		Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_71154.2
IL_8FL0_0701/L3/4891:4896,
1/L3/4924:4928		No text annotation
IL_8FL0_0711/L3/4899:4901,
1/L3/4920:4921		No text annotation
IL_8FL0_0721/L3/4972:4975,
1/L3/4983:4986		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_8FL0_0741/L3/4997:4998,
1/L3/5052:5054		Major groove intercalation
geometric
IL_4WF9_106
IL_77710.1
IL_8FL0_0751/L3/5000:5002,
1/L3/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_8FL0_0761/L3/5003:5009,
1/L3/5039:5044		No text annotation
IL_8FL0_0771/L3/5012:5014,
1/L3/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_8FL0_0791/L4/15:16,
1/L4/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_8FL0_0801/L4/21:27,
1/L4/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8FL0_0811/L4/28:29,
1/L4/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_8FL0_0821/L4/32:36,
1/L4/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_8FL0_0831/L4/71:78,
1/L4/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8FL0_0851/L4/82:85,
1/L4/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_8FL0_001Single bulged C
IL_8FL0_004No text annotation
IL_8FL0_005Isolated non-canonical cWW pair
IL_8FL0_014Decoding loop related
IL_8FL0_015Isolated cWS basepair
IL_8FL0_017Single bulged G
IL_8FL0_019Major groove intercalation
IL_8FL0_022Single bulged A
IL_8FL0_024No text annotation
IL_8FL0_026Single bulged G
IL_8FL0_033No text annotation
IL_8FL0_043Single bulged U
IL_8FL0_045No text annotation
IL_8FL0_046Isolated non-canonical cWW pair
IL_8FL0_047Tandem non-canonical cWW pairs
IL_8FL0_087Partly complementary
IL_8FL0_051No text annotation
IL_8FL0_073Isolated non-canonical cWW pair
IL_8FL0_078Double sheared
IL_8FL0_084Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8FL0_0051/L3/1726:1727,
1/L3/1802:1806,
1/L3/1832:1837		No text annotation
J3_8FL0_0011/L3/1969:1971,
1/L3/1995:2001,
1/L3/2016:2018		No text annotation
homologous
J3_5TBW_007
NA
J3_8FL0_0021/L3/4241:4243,
1/L3/4267:4269,
1/L3/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_8FL0_0031/L3/4463:4466,
1/L3/4491:4493,
1/L3/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_8FL0_0061/L3/4751:4754,
1/L3/4879:4883,
1/L3/4936:4948		No text annotation
J3_8FL0_0041/L3/4970:4972,
1/L3/4986:4991,
1/L3/5060:5063		No text annotation
J3_8FL0_0071/L4/9:14,
1/L4/65:66,
1/L4/109:110		No text annotation
homologous
J3_8P9A_066
J3_26985.1
J4_8FL0_0011/L3/4587:4590,
1/L3/4620:4621,
1/L3/4676:4678,
1/L3/4712:4715		No text annotation
J5_8FL0_0021/L3/4199:4200,
1/L3/4232:4235,
1/L3/4289:4293,
1/L3/4317:4318,
1/L3/4329:4331		No text annotation

Problematic loops

#loop idProblemSequence
J5_8FL0_001No text annotation

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