HL_8FL2_031

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

8FL2|1|L3|A|1891, 8FL2|1|L3|A|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL2_031 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.2216

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FL2|1|L3|G|1886
8FL2|1|L3|G|1887
8FL2|1|L3|A|1888
8FL2|1|L3|U|1889
8FL2|1|L3|G|1890
8FL2|1|L3|A|1891
8FL2|1|L3|A|1892
8FL2|1|L3|C|1893

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L32

Chain LT

60S ribosomal protein L35a

Chain NB

Guanine nucleotide-binding protein-like 3