HL_8FL2_061

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

8FL2|1|L3|A|4271, 8FL2|1|L3|A|4273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL2_061 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.2615

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

8FL2|1|L3|C|4270
8FL2|1|L3|A|4271
8FL2|1|L3|G|4272
8FL2|1|L3|A|4273
8FL2|1|L3|A|4274
8FL2|1|L3|G|4275
8FL2|1|L3|G|4276
8FL2|1|L3|G|4277

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain NT

Protein SDA1 homolog