HL_8FL2_078

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8FL2|1|L3|U|1320

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL2_078 not in the Motif Atlas

Geometric match to HL_6JXM_002

Geometric discrepancy: 0.256

The information below is about HL_6JXM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FL2|1|L3|U|1317
8FL2|1|L3|C|1318
8FL2|1|L3|U|1319
8FL2|1|L3|U|1320
8FL2|1|L3|G|1321
8FL2|1|L3|1MA|1322
8FL2|1|L3|A|1323
8FL2|1|L3|A|1324
8FL2|1|L3|C|1325
8FL2|1|L3|A2M|1326

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L27a

Chain LQ

60S ribosomal protein L32

Chain NC

Nucleolar GTP-binding protein 2