HL_8FL3_013

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

8FL3|1|L3|G|315, 8FL3|1|L3|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL3_013 not in the Motif Atlas

Homologous match to HL_8C3A_009

Geometric discrepancy: 0.1679

The information below is about HL_8C3A_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8FL3|1|L3|G|314
8FL3|1|L3|G|315
8FL3|1|L3|U|316
8FL3|1|L3|A|317
8FL3|1|L3|A|318
8FL3|1|L3|A|319
8FL3|1|L3|C|320
8FL3|1|L3|U|321
8FL3|1|L3|C|322
8FL3|1|L3|C|323

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain LK

60S ribosomal protein L27a

Chain LU

60S ribosomal protein L36