RNA 3D Hub //

8FL3 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8FL3_0011/L1/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_8FL3_0021/L1/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_8FL3_0031/L1/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_8FL3_0051/L3/37:44No text annotation
geometric
HL_5J7L_139
NA
HL_8FL3_0061/L3/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_8FL3_0071/L3/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_8FL3_0091/L3/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8FL3_0101/L3/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_8FL3_0111/L3/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8FL3_0121/L3/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_8FL3_0131/L3/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8FL3_0141/L3/368:373GNRA
homologous
HL_8C3A_010
NA
HL_8FL3_0761/L3/393:398GNRA
homologous
HL_8C3A_011
NA
HL_8FL3_0771/L3/1317:1326tRNA anticodon loop
geometric
HL_6JXM_002
HL_97725.1
HL_8FL3_0781/L3/1364:1373No text annotation
HL_8FL3_0201/L3/1389:1394GNRA
homologous
HL_5TBW_016
NA
HL_8FL3_0221/L3/1480:1484Mini UNCG
geometric
HL_4L8H_001
HL_90436.2
HL_8FL3_0231/L3/1561:1566GNRA
homologous
HL_5TBW_019
NA
HL_8FL3_0241/L3/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_8FL3_0251/L3/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_8FL3_0261/L3/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_8FL3_0281/L3/1816:1823No text annotation
geometric
HL_5TBW_024
NA
HL_8FL3_0291/L3/1864:1870Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_8FL3_0301/L3/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_8FL3_0311/L3/1978:1988No text annotation
homologous
HL_8C3A_027
NA
HL_8FL3_0321/L3/2006:2013GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8FL3_0341/L3/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_8FL3_0351/L3/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8FL3_0361/L3/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8FL3_0371/L3/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_8FL3_0381/L3/2469:2471Externally structured
geometric
HL_8C3A_022
NA
HL_8FL3_0401/L3/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_8FL3_0411/L3/2561:2566GNRA
geometric
HL_5TBW_017
NA
HL_8FL3_0421/L3/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_8FL3_0791/L3/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_8FL3_0441/L3/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_8FL3_0451/L3/2705:2710No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_8FL3_0461/L3/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_8FL3_0471/L3/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_8FL3_0481/L3/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_8FL3_0491/L3/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_8FL3_0501/L3/3614:3618No text annotation
geometric
HL_6U8D_003
HL_32346.6
HL_8FL3_0801/L3/3639:3649No text annotation
homologous
HL_8C3A_046
NA
HL_8FL3_0811/L3/3724:3729GNRA
homologous
HL_8P9A_159
HL_34789.2
HL_8FL3_0821/L3/3758:3766No text annotation
HL_8FL3_0551/L3/3873:3882No text annotation
geometric
HL_1WZ2_007
HL_75660.7
HL_8FL3_0581/L3/4210:4222Mini UNCG
geometric
HL_8SP9_002
HL_12626.2
HL_8FL3_0591/L3/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_8FL3_0601/L3/4270:4277Purine riboswitch
geometric
HL_4LX6_002
HL_46333.1
HL_8FL3_0621/L3/4321:4326GNRA
homologous
HL_5TBW_059
NA
HL_8FL3_0631/L3/4352:4362Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_8FL3_0841/L3/4474:4481GNRA variation
homologous
HL_8CRE_061
NA
HL_8FL3_0661/L3/4497:4503Mini UNCG
geometric
HL_4TUW_002
HL_12626.2
HL_8FL3_0671/L3/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_8FL3_0681/L3/4603:4608GNRA
homologous
HL_8C3A_066
NA
HL_8FL3_0691/L3/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8FL3_0701/L3/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_8FL3_0711/L3/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_8FL3_0721/L3/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_8FL3_0831/L4/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8FL3_0741/L4/36:41No text annotation
homologous
HL_5TBW_185
NA

Problematic loops

#loop idProblemSequence
HL_8FL3_004No text annotation
HL_8FL3_008No text annotation
HL_8FL3_015GNRA with extra cWW
HL_8FL3_016No text annotation
HL_8FL3_017No text annotation
HL_8FL3_018No text annotation
HL_8FL3_019No text annotation
HL_8FL3_021No text annotation
HL_8FL3_027No text annotation
HL_8FL3_033Mini UNCG
HL_8FL3_039No text annotation
HL_8FL3_043No text annotation
HL_8FL3_051No text annotation
HL_8FL3_052No text annotation
HL_8FL3_053No text annotation
HL_8FL3_054No text annotation
HL_8FL3_056Externally structured
HL_8FL3_057No text annotation
HL_8FL3_061No text annotation
HL_8FL3_064No text annotation
HL_8FL3_065No text annotation
HL_8FL3_073No text annotation
HL_8FL3_075No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8FL3_0011/L1/13:19,
1/L3/415:421		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_8FL3_0021/L1/25:26,
1/L3/348:350		Single bulged A
homologous
IL_5TBW_013
NA
IL_8FL3_0031/L1/32:33,
1/L3/339:342		Minor groove platform
geometric
IL_7RQB_073
NA
IL_8FL3_0041/L1/64:66,
1/L1/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8FL3_0051/L1/139:141,
1/L3/16:18		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.2
IL_8FL3_0061/L1/143:144,
1/L3/12:14		Single bulged U
homologous
IL_5TBW_003
NA
IL_8FL3_0071/L1/149:151,
1/L3/6:7		Single bulged C
homologous
IL_5TBW_002
NA
IL_8FL3_0081/L3/26:27,
1/L3/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_8FL3_0091/L3/30:37,
1/L3/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_8FL3_0101/L3/81:88,
1/L3/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_8FL3_0111/L3/118:121,
1/L3/152:153		Stack outside cWW
geometric
IL_5J7L_268
NA
IL_8FL3_1821/L3/118:122,
1/L3/147:153		No text annotation
IL_8FL3_0121/L3/121:122,
1/L3/147:152		No text annotation
geometric
IL_4V9F_009
IL_10396.1
IL_8FL3_0131/L3/125:126,
1/L3/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_8FL3_0141/L3/169:173,
1/L3/263:266		No text annotation
IL_8FL3_0171/L3/195:196,
1/L3/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_8FL3_0181/L3/199:201,
1/L3/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_8FL3_0191/L3/387:390,
1/L3/401:414		No text annotation
homologous
IL_5TBW_014
NA
IL_8FL3_0211/L3/443:446,
1/L3/1300:1304		No text annotation
geometric
IL_4PHY_003
IL_49140.1
IL_8FL3_0221/L3/448:450,
1/L3/1297:1298		Single bulged C
geometric
IL_4C7O_003
IL_05642.2
IL_8FL3_0231/L3/459:460,
1/L3/695:697		Single bulged C
geometric
IL_1S03_006
IL_05642.2
IL_8FL3_0241/L3/462:464,
1/L3/691:693		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8FL3_0251/L3/466:472,
1/L3/682:689		No text annotation
IL_8FL3_0291/L3/500:504,
1/L3/654:655		Multiple bulged bases
geometric
IL_1R3E_001
IL_05670.1
IL_8FL3_0301/L3/508:510,
1/L3/649:650		Single bulged A
geometric
IL_6WPI_001
IL_14190.2
IL_8FL3_0311/L3/709:710,
1/L3/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_8FL3_0321/L3/723:724,
1/L3/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8FL3_0331/L3/727:731,
1/L3/938:939		No text annotation
IL_8FL3_0341/L3/732:735,
1/L3/928:937		No text annotation
IL_8FL3_0351/L3/737:739,
1/L3/924:926		No text annotation
geometric
IL_5J7L_341
NA
IL_8FL3_0361/L3/740:742,
1/L3/922:923		Single bulged C
geometric
IL_7KGA_004
IL_05642.2
IL_8FL3_0371/L3/745:752,
1/L3/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_8FL3_0381/L3/1073:1074,
1/L3/1237:1239		Single bulged A
geometric
IL_2VPL_002
IL_14190.2
IL_8FL3_0401/L3/1082:1084,
1/L3/1213:1217		Isolated cWS basepair
geometric
IL_4WF9_034
NA
IL_8FL3_0411/L3/1086:1087,
1/L3/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_8FL3_0421/L3/1244:1245,
1/L3/1265:1267		Single bulged G
geometric
IL_4V88_442
NA
IL_8FL3_0431/L3/1357:1360,
1/L3/1379:1382		No text annotation
IL_8FL3_1841/L3/1357:1361,
1/L3/1376:1382		No text annotation
IL_8FL3_0441/L3/1360:1361,
1/L3/1376:1379		Major groove intercalation
geometric
IL_1NBS_009
IL_71421.2
IL_8FL3_0451/L3/1425:1429,
1/L3/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_8FL3_0461/L3/1431:1434,
1/L3/1450:1453		Double sheared
geometric
IL_3D0U_002
IL_58355.2
IL_8FL3_0471/L3/1467:1468,
1/L3/1496:1498		Single bulged A
homologous
IL_5TBW_024
NA
IL_8FL3_0481/L3/1474:1476,
1/L3/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_15011.2
IL_8FL3_0491/L3/1479:1480,
1/L3/1484:1486		No text annotation
IL_8FL3_1851/L3/1520:1522,
1/L3/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8P9A_255
IL_01003.2
IL_8FL3_1861/L3/1522:1526,
1/L3/1648:1655		No text annotation
homologous
IL_8P9A_256
IL_73855.1
IL_8FL3_0511/L3/1545:1546,
1/L3/1612:1614		Single bulged A
homologous
IL_8C3A_031
NA
IL_8FL3_0521/L3/1550:1551,
1/L3/1576:1578		Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_8FL3_0531/L3/1551:1555,
1/L3/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_8FL3_0541/L3/1586:1589,
1/L3/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8FL3_0551/L3/1590:1592,
1/L3/1603:1604		Single bulged U
geometric
IL_7RQB_080
NA
IL_8FL3_0561/L3/1624:1626,
1/L3/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_8FL3_0571/L3/1686:1688,
1/L3/1848:1851		No text annotation
IL_8FL3_0591/L3/1723:1725,
1/L3/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_8FL3_1871/L3/1746:1751,
1/L3/1779:1782		No text annotation
IL_8FL3_0611/L3/1753:1756,
1/L3/1776:1777		Major groove minor groove platform; mini C-loop
geometric
IL_4LFB_025
IL_73108.2
IL_8FL3_0641/L3/1814:1816,
1/L3/1823:1824		Single bulged G
homologous
IL_8C3A_048
NA
IL_8FL3_1881/L3/1858:1860,
1/L3/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8FL3_0671/L3/1905:1909,
1/L3/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8FL3_0681/L3/1911:1918,
1/L3/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_8FL3_0691/L3/1918:1920,
1/L3/2063:2064		No text annotation
geometric
IL_8CRE_040
NA
IL_8FL3_0701/L3/1920:1922,
1/L3/2062:2063		No text annotation
IL_8FL3_0711/L3/1926:1933,
1/L3/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_8FL3_0721/L3/1933:1944,
1/L3/2038:2053		No text annotation
IL_8FL3_0731/L3/1946:1948,
1/L3/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_8FL3_0741/L3/1957:1965,
1/L3/2022:2026		Kink-turn
homologous
IL_8C3A_057
NA
IL_8FL3_0751/L3/1973:1977,
1/L3/1989:1993		No text annotation
homologous
IL_8C3A_058
NA
IL_8FL3_0761/L3/2001:2005,
1/L3/2014:2016		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_8FL3_0771/L3/2083:2085,
1/L3/2272:2273		Single bulged C
geometric
IL_4C7O_003
IL_05642.2
IL_8FL3_0781/L3/2290:2292,
1/L3/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_8FL3_0791/L3/2299:2301,
1/L3/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_8FL3_0801/L3/2302:2309,
1/L3/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_8FL3_0811/L3/2312:2314,
1/L3/2325:2326		Single bulged A
geometric
IL_5WWT_001
IL_14190.2
IL_8FL3_1891/L3/2358:2364,
1/L3/3858:3863		No text annotation
homologous
IL_8C3A_065
NA
IL_8FL3_1901/L3/2415:2419,
1/L3/2427:2429		No text annotation
geometric
IL_6CZR_410
NA
IL_8FL3_0841/L3/2446:2450,
1/L3/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8FL3_0851/L3/2542:2547,
1/L3/2772:2774		No text annotation
geometric
IL_6DME_003
IL_75527.2
IL_8FL3_0861/L3/2549:2550,
1/L3/2768:2770		Single bulged U
geometric
IL_2A64_002
IL_97561.2
IL_8FL3_0871/L3/2589:2593,
1/L3/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_8FL3_0881/L3/2613:2614,
1/L3/2724:2726		Single bulged C
homologous
IL_8C3A_075
NA
IL_8FL3_0891/L3/2614:2615,
1/L3/2722:2724		Single stack bend
geometric
IL_5TBW_070
NA
IL_8FL3_0901/L3/2646:2648,
1/L3/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_8FL3_0911/L3/2651:2653,
1/L3/2681:2682		Single bulged G
geometric
IL_7D7W_002
IL_28408.2
IL_8FL3_0921/L3/2656:2662,
1/L3/2672:2678		No text annotation
homologous
IL_8C3A_079
NA
IL_8FL3_0931/L3/2704:2705,
1/L3/2710:2712		No text annotation
IL_8FL3_1911/L3/2832:2838,
1/L3/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_8FL3_1921/L3/2844:2846,
1/L3/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_8FL3_1931/L3/2847:2850,
1/L3/3840:3841		Major groove platform; stack outside cWW
geometric
IL_8C3A_082
NA
IL_8FL3_1941/L3/2847:2855,
1/L3/3837:3841		No text annotation
homologous
IL_8P9A_305
IL_80252.1
IL_8FL3_0981/L3/2850:2855,
1/L3/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_8FL3_0991/L3/2867:2872,
1/L3/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_8FL3_1001/L3/2889:2891,
1/L3/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8FL3_1011/L3/2896:2897,
1/L3/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_8FL3_1021/L3/2901:2903,
1/L3/3591:3598		No text annotation
IL_8FL3_1041/L3/2920:2925,
1/L3/3272:3277		No text annotation
geometric
IL_4V88_462
NA
IL_8FL3_1071/L3/3632:3633,
1/L3/3827:3829		Single bulged A
homologous
IL_8C3A_087
NA
IL_8FL3_1081/L3/3660:3665,
1/L3/3677:3684		No text annotation
homologous
IL_8C3A_088
NA
IL_8FL3_1091/L3/3700:3703,
1/L3/3749:3750		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_8FL3_1101/L3/3704:3705,
1/L3/3745:3748		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_8FL3_1121/L3/3708:3710,
1/L3/3741:3742		Single bulged U
geometric
IL_7KVT_002
IL_97561.2
IL_8FL3_1131/L3/3710:3714,
1/L3/3739:3741		8-nt loop receptor
geometric
IL_6CK5_002
IL_70784.1
IL_8FL3_1951/L3/3715:3721,
1/L3/3732:3738		No text annotation
homologous
IL_8P9A_316
IL_65359.1
IL_8FL3_1961/L3/3782:3785,
1/L3/3814:3820		No text annotation
IL_8FL3_1171/L3/3788:3791,
1/L3/3809:3811		Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
IL_68118.2
IL_8FL3_1191/L3/3895:3898,
1/L3/4563:4565		No text annotation
homologous
IL_8C3A_096
NA
IL_8FL3_1211/L3/3900:3901,
1/L3/4558:4561		Major groove platform
geometric
IL_4WF9_078
IL_48076.8
IL_8FL3_1231/L3/3913:3915,
1/L3/4388:4389		Single bulged U
geometric
IL_4LFB_046
IL_97561.2
IL_8FL3_1241/L3/3916:3917,
1/L3/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8FL3_1261/L3/3927:3929,
1/L3/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_8FL3_1271/L3/3948:3949,
1/L3/4063:4065		Single bulged C
geometric
IL_1S03_002
IL_05642.2
IL_8FL3_1281/L3/3950:3952,
1/L3/4060:4062		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10892.2
IL_8FL3_1291/L3/3955:3966,
1/L3/4055:4057		No text annotation
IL_8FL3_1311/L3/3970:3973,
1/L3/4038:4051		No text annotation
geometric
IL_3U4M_003
IL_75283.2
IL_8FL3_1321/L3/4082:4088,
1/L3/4161:4164		No text annotation
homologous
IL_5TBW_096
NA
IL_8FL3_1971/L3/4201:4204,
1/L3/4228:4230		Major groove platform with extra cWW
geometric
IL_3PDR_004
IL_36931.2
IL_8FL3_1351/L3/4243:4245,
1/L3/4263:4267		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_8FL3_1981/L3/4291:4293,
1/L3/4317:4318		No text annotation
IL_8FL3_1991/L3/4295:4298,
1/L3/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_8FL3_1391/L3/4347:4350,
1/L3/4364:4365		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_8FL3_1411/L3/4412:4416,
1/L3/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_8FL3_2001/L3/4456:4458,
1/L3/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_8FL3_1431/L3/4458:4459,
1/L3/4517:4520		No text annotation
homologous
IL_8C3A_117
NA
IL_8FL3_1441/L3/4466:4468,
1/L3/4489:4491		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8FL3_2011/L3/4466:4470,
1/L3/4485:4491		No text annotation
IL_8FL3_1451/L3/4468:4470,
1/L3/4485:4489		No text annotation
IL_8FL3_1471/L3/4495:4497,
1/L3/4503:4505		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_8FL3_1491/L3/4537:4538,
1/L3/4547:4549		Minor groove platform
geometric
IL_7A0S_028
IL_34520.2
IL_8FL3_1521/L3/4580:4582,
1/L3/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_8FL3_1531/L3/4582:4585,
1/L3/4717:4721		Other IL
geometric
IL_4WF9_054
IL_74317.1
IL_8FL3_2021/L3/4590:4592,
1/L3/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.2
IL_8FL3_1541/L3/4596:4603,
1/L3/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8FL3_2031/L3/4624:4629,
1/L3/4669:4673		No text annotation
IL_8FL3_2041/L3/4632:4637,
1/L3/4662:4666		No text annotation
homologous
IL_8P9A_346
IL_98200.1
IL_8FL3_1571/L3/4638:4640,
1/L3/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.2
IL_8FL3_1581/L3/4641:4642,
1/L3/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_8FL3_1591/L3/4681:4685,
1/L3/4705:4709		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8FL3_1601/L3/4739:4742,
1/L3/4958:4960		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8FL3_1611/L3/4743:4746,
1/L3/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_8FL3_1621/L3/4749:4751,
1/L3/4948:4951		No text annotation
IL_8FL3_1631/L3/4756:4765,
1/L3/4869:4877		No text annotation
IL_8FL3_1641/L3/4769:4771,
1/L3/4863:4865		Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_01003.2
IL_8FL3_1651/L3/4885:4889,
1/L3/4930:4934		Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_71154.2
IL_8FL3_1661/L3/4891:4896,
1/L3/4924:4928		No text annotation
IL_8FL3_1671/L3/4899:4901,
1/L3/4920:4921		No text annotation
IL_8FL3_2051/L3/4972:4975,
1/L3/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_8C3A_135
NA
IL_8FL3_1681/L3/4992:4994,
1/L3/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_01003.2
IL_8FL3_1691/L3/4997:4998,
1/L3/5052:5054		Major groove intercalation
geometric
IL_4WF9_106
IL_77710.1
IL_8FL3_1701/L3/5000:5002,
1/L3/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_8FL3_1711/L3/5003:5009,
1/L3/5039:5044		No text annotation
IL_8FL3_1731/L3/5012:5014,
1/L3/5035:5036		Single bulged C
geometric
IL_4WF9_035
IL_05642.2
IL_8FL3_1741/L3/5014:5017,
1/L3/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_8FL3_1751/L4/15:16,
1/L4/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_8FL3_1761/L4/21:27,
1/L4/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8FL3_1771/L4/28:29,
1/L4/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_8FL3_1781/L4/32:36,
1/L4/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_8FL3_1791/L4/71:78,
1/L4/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_62167.2
IL_8FL3_2061/L4/79:81,
1/L4/95:97		Isolated non-canonical cWW pair
homologous
IL_7A0S_107
IL_71625.2
IL_8FL3_1811/L4/82:85,
1/L4/92:94		Other IL
geometric
IL_5TBW_064
NA

Problematic loops

#loop idProblemSequence
IL_8FL3_015Single bulged C
IL_8FL3_016Not an internal loop
IL_8FL3_020Isolated non-canonical cWW pair
IL_8FL3_026No text annotation
IL_8FL3_027Isolated non-canonical cWW pair
IL_8FL3_183Single bulged U
IL_8FL3_028Single bulged C
IL_8FL3_039Decoding loop related
IL_8FL3_050No text annotation
IL_8FL3_058No text annotation
IL_8FL3_060No text annotation
IL_8FL3_062Tandem non-canonical cWW pairs
IL_8FL3_063No text annotation
IL_8FL3_065Tandem non-canonical cWW pairs
IL_8FL3_066Tandem non-canonical cWW pairs
IL_8FL3_082Tandem non-canonical cWW pairs
IL_8FL3_083No text annotation
IL_8FL3_094No text annotation
IL_8FL3_095Stack and bulge
IL_8FL3_096No text annotation
IL_8FL3_097Major groove platform with extra pair
IL_8FL3_103Decoding loop related
IL_8FL3_105Isolated non-canonical cWW pair
IL_8FL3_106No text annotation
IL_8FL3_111Isolated non-canonical cWW pair
IL_8FL3_114No text annotation
IL_8FL3_115Stack and bulge
IL_8FL3_116Not an internal loop
IL_8FL3_118Stack and bulge
IL_8FL3_120Isolated cWH basepair
IL_8FL3_122Isolated non-canonical cWW pair
IL_8FL3_125Isolated non-canonical cWW pair
IL_8FL3_130Isolated non-canonical cWW pair
IL_8FL3_133No text annotation
IL_8FL3_134No text annotation
IL_8FL3_136Decoding loop related
IL_8FL3_137Tandem non-canonical cWW pairs with near WC pairs
IL_8FL3_138Not an internal loop
IL_8FL3_140Not an internal loop
IL_8FL3_142No text annotation
IL_8FL3_146Isolated cWS basepair
IL_8FL3_148No text annotation
IL_8FL3_150Isolated non-canonical cWW pair
IL_8FL3_151Not an internal loop
IL_8FL3_155No text annotation
IL_8FL3_156Triple sheared related
IL_8FL3_172Stack and bulge
IL_8FL3_180Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8FL3_0121/L1/19:20,
1/L3/380:387,
1/L3/414:415		No text annotation
geometric
J3_5TBW_002
NA
J3_8FL3_0131/L1/19:20,
1/L3/380:390,
1/L3/401:415		No text annotation
geometric
J3_5TBW_062
NA
J3_8FL3_0141/L1/21:24,
1/L3/351:367,
1/L3/374:379		No text annotation
geometric
J3_5TBW_061
NA
J3_8FL3_0151/L1/44:45,
1/L1/58:64,
1/L1/95:99		No text annotation
homologous
J3_8C3A_060
NA
J3_8FL3_0011/L3/112:116,
1/L3/155:160,
1/L3/275:278		No text annotation
J3_8FL3_0161/L3/196:199,
1/L3/215:228,
1/L3/240:244		No text annotation
J3_8FL3_0171/L3/451:455,
1/L3/701:705,
1/L3/1292:1296		No text annotation
J3_8FL3_0021/L3/1531:1537,
1/L3/1622:1624,
1/L3/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_8FL3_0031/L3/1546:1548,
1/L3/1580:1584,
1/L3/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_8FL3_0181/L3/1726:1727,
1/L3/1802:1806,
1/L3/1832:1837		No text annotation
J3_8FL3_0041/L3/1969:1971,
1/L3/1995:2001,
1/L3/2016:2018		No text annotation
homologous
J3_5TBW_007
NA
J3_8FL3_0051/L3/2393:2399,
1/L3/2805:2807,
1/L3/2819:2822		No text annotation
homologous
J3_8C3A_006
NA
J3_8FL3_0061/L3/2402:2405,
1/L3/2785:2791,
1/L3/2800:2802		No text annotation
homologous
J3_5TBW_009
NA
J3_8FL3_0191/L3/2440:2445,
1/L3/2515:2519,
1/L3/2536:2537		No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_8FL3_0071/L3/2551:2555,
1/L3/2572:2575,
1/L3/2757:2767		No text annotation
J3_8FL3_0201/L3/2575:2576,
1/L3/2585:2589,
1/L3/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_8FL3_0211/L3/2598:2602,
1/L3/2737:2738,
1/L3/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8FL3_0081/L3/3937:3939,
1/L3/4074:4078,
1/L3/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_8FL3_0091/L3/4241:4243,
1/L3/4267:4269,
1/L3/4278:4283		No text annotation
homologous
J3_8C3A_010
NA
J3_8FL3_0221/L3/4463:4466,
1/L3/4491:4493,
1/L3/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_8FL3_0231/L3/4751:4754,
1/L3/4879:4883,
1/L3/4936:4948		No text annotation
J3_8FL3_0241/L3/4970:4972,
1/L3/4986:4991,
1/L3/5060:5063		No text annotation
J3_8FL3_0251/L4/9:14,
1/L4/65:66,
1/L4/109:110		No text annotation
homologous
J3_8P9A_066
J3_26985.1
J4_8FL3_0011/L3/111:112,
1/L3/278:283,
1/L3/304:310,
1/L3/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8FL3_0021/L3/196:199,
1/L3/215:222,
1/L3/226:228,
1/L3/240:244		No text annotation
J4_8FL3_0031/L3/981:983,
1/L3/1070:1072,
1/L3/1240:1243,
1/L3/1268:1273		No text annotation
J4_8FL3_0041/L3/2365:2371,
1/L3/2389:2391,
1/L3/2824:2829,
1/L3/3856:3857		No text annotation
J4_8FL3_0051/L3/2406:2410,
1/L3/2434:2439,
1/L3/2538:2539,
1/L3/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_8FL3_0061/L3/2618:2619,
1/L3/2637:2642,
1/L3/2692:2698,
1/L3/2718:2719		No text annotation
J4_8FL3_0071/L3/4587:4590,
1/L3/4620:4621,
1/L3/4676:4678,
1/L3/4712:4715		No text annotation
J5_8FL3_0011/L1/35:42,
1/L1/101:106,
1/L1/113:114,
1/L1/136:138,
1/L3/19:21		No text annotation
J5_8FL3_0021/L3/1335:1340,
1/L3/1516:1519,
1/L3/1658:1661,
1/L3/2288:2290,
1/L3/2345:2351		No text annotation
homologous
J5_8C3A_002
NA
J5_8FL3_0031/L3/2855:2863,
1/L3/2887:2888,
1/L3/3613:3614,
1/L3/3618:3626,
1/L3/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_8FL3_0041/L3/3901:3909,
1/L3/4393:4407,
1/L3/4435:4453,
1/L3/4527:4534,
1/L3/4552:4558		No text annotation
J6_8FL3_0011/L1/33:35,
1/L3/21:26,
1/L3/57:67,
1/L3/74:78,
1/L3/105:109,
1/L3/332:339		No text annotation
J6_8FL3_0021/L3/1352:1355,
1/L3/1384:1388,
1/L3/1395:1399,
1/L3/1418:1421,
1/L3/1464:1466,
1/L3/1499:1504		No text annotation
J6_8FL3_0031/L3/3634:3638,
1/L3/3650:3654,
1/L3/3690:3698,
1/L3/3752:3753,
1/L3/3771:3782,
1/L3/3820:3826		No text annotation
J6_8FL3_0041/L3/3634:3638,
1/L3/3650:3654,
1/L3/3690:3698,
1/L3/3752:3753,
1/L3/3771:3785,
1/L3/3814:3826		No text annotation
J7_8FL3_0011/L3/1666:1673,
1/L3/1682:1685,
1/L3/1852:1855,
1/L3/1879:1884,
1/L3/1895:1899,
1/L3/2077:2078,
1/L3/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_8FL3_010No text annotation
J3_8FL3_011No text annotation

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