HL_8FL3_066

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

8FL3|1|L3|C|4502

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL3_066 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.2265

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8FL3|1|L3|U|4497
8FL3|1|L3|OMU|4498
8FL3|1|L3|OMG|4499
8FL3|1|L3|PSU|4500
8FL3|1|L3|U|4501
8FL3|1|L3|C|4502
8FL3|1|L3|A|4503

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain NC

Nucleolar GTP-binding protein 2

Chain SR

GTP-binding protein 4