HL_8FL6_019

3D structure

PDB id

8FL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CCCGAAGAGGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL6_019 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1772

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FL6|1|L3|C|1250
8FL6|1|L3|C|1251
8FL6|1|L3|C|1252
8FL6|1|L3|G|1253
8FL6|1|L3|A|1254
8FL6|1|L3|A|1255
8FL6|1|L3|G|1256
8FL6|1|L3|A|1257
8FL6|1|L3|G|1258
8FL6|1|L3|G|1259
8FL6|1|L3|G|1260

Current chains

Chain L3

28S rRNA

Nearby chains