RNA 3D Hub //

8FL6 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8FL6_0011/L1/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_8FL6_0021/L1/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_8FL6_0031/L1/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_8FL6_0061/L3/37:44No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_8FL6_0071/L3/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_8FL6_0081/L3/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_8FL6_0101/L3/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8FL6_0111/L3/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_8FL6_0121/L3/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8FL6_0131/L3/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_8FL6_0141/L3/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8FL6_0151/L3/368:373GNRA
homologous
HL_8C3A_010
NA
HL_8FL6_0761/L3/393:398GNRA
homologous
HL_8C3A_011
NA
HL_8FL6_0181/L3/1172:1189No text annotation
HL_8FL6_0771/L3/1364:1373No text annotation
HL_8FL6_0221/L3/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_8FL6_0231/L3/1435:1449No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_8FL6_0241/L3/1480:1484Mini UNCG
geometric
HL_4V88_192
NA
HL_8FL6_0251/L3/1561:1566GNRA
homologous
HL_5TBW_019
NA
HL_8FL6_0261/L3/1593:1602No text annotation
homologous
HL_8C3A_020
NA
HL_8FL6_0271/L3/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_8FL6_0281/L3/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_8FL6_0291/L3/1816:1823No text annotation
homologous
HL_5TBW_024
NA
HL_8FL6_0301/L3/1886:1893No text annotation
HL_8FL6_0311/L3/1978:1988No text annotation
homologous
HL_8C3A_027
NA
HL_8FL6_0321/L3/2006:2013GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8FL6_0341/L3/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_8FL6_0351/L3/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8FL6_0361/L3/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8FL6_0371/L3/2458:2463GNRA variation
homologous
HL_5TBW_033
NA
HL_8FL6_0381/L3/2469:2471No text annotation
HL_8FL6_0401/L3/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_8FL6_0421/L3/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_8FL6_0781/L3/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_8FL6_0441/L3/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_8FL6_0451/L3/2705:2710No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_8FL6_0461/L3/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_8FL6_0471/L3/2792:2799No text annotation
homologous
HL_8C3A_041
NA
HL_8FL6_0481/L3/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_8FL6_0491/L3/2872:2877UNCG
geometric
HL_4LFB_009
HL_61337.2
HL_8FL6_0501/L3/3614:3618No text annotation
geometric
HL_6U8D_003
HL_32346.6
HL_8FL6_0791/L3/3639:3649No text annotation
homologous
HL_8C3A_046
NA
HL_8FL6_0521/L3/3668:3674GNRA
geometric
HL_4PQV_001
HL_34789.2
HL_8FL6_0801/L3/3724:3729GNRA
homologous
HL_8C3A_048
NA
HL_8FL6_0581/L3/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_8FL6_0591/L3/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_8FL6_0601/L3/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_8FL6_0611/L3/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_8FL6_0621/L3/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_8FL6_0631/L3/4352:4362Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_8FL6_0651/L3/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_8FL6_0661/L3/4495:4505No text annotation
geometric
HL_6GSK_218
HL_14063.2
HL_8FL6_0671/L3/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_8FL6_0681/L3/4603:4608GNRA
homologous
HL_5TBW_065
NA
HL_8FL6_0691/L3/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8FL6_0701/L3/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_8FL6_0711/L3/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_8FL6_0721/L3/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_8FL6_0831/L4/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8FL6_0741/L4/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_8FL6_0751/L4/86:91GNRA
homologous
HL_5TBW_186
NA

Problematic loops

#loop idProblemSequence
HL_8FL6_004No text annotation
HL_8FL6_005No text annotation
HL_8FL6_009No text annotation
HL_8FL6_016GNRA with extra cWW
HL_8FL6_017No text annotation
HL_8FL6_019No text annotation
HL_8FL6_020No text annotation
HL_8FL6_021No text annotation
HL_8FL6_033No text annotation
HL_8FL6_039No text annotation
HL_8FL6_041GNRA
HL_8FL6_043No text annotation
HL_8FL6_051No text annotation
HL_8FL6_053No text annotation
HL_8FL6_054No text annotation
HL_8FL6_055No text annotation
HL_8FL6_081No text annotation
HL_8FL6_056No text annotation
HL_8FL6_057No text annotation
HL_8FL6_064No text annotation
HL_8FL6_082No text annotation
HL_8FL6_073Externally structured

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8FL6_0011/L1/13:19,
1/L3/415:421		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_8FL6_0021/L1/25:26,
1/L3/348:350		Single bulged A
homologous
IL_5TBW_013
NA
IL_8FL6_0031/L1/32:33,
1/L3/339:342		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_55206.1
IL_8FL6_0041/L1/64:66,
1/L1/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8FL6_0051/L1/139:141,
1/L3/16:18		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.2
IL_8FL6_0061/L1/143:144,
1/L3/12:14		Single bulged U
homologous
IL_5TBW_003
NA
IL_8FL6_0071/L1/149:151,
1/L3/6:7		Single bulged C
homologous
IL_5TBW_002
NA
IL_8FL6_0081/L2/13:14,
1/L2/42:44		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_8FL6_0091/L2/51:52,
1/L2/93:96		Multiple bulged bases
geometric
IL_1R3E_002
IL_05670.1
IL_8FL6_0111/L2/64:66,
1/L2/84:86		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10892.2
IL_8FL6_0121/L3/26:27,
1/L3/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_8FL6_0131/L3/30:37,
1/L3/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_8FL6_0141/L3/81:88,
1/L3/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_8FL6_0151/L3/118:122,
1/L3/147:153		No text annotation
IL_8FL6_0161/L3/125:126,
1/L3/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_8FL6_0171/L3/169:173,
1/L3/263:266		No text annotation
IL_8FL6_0201/L3/195:196,
1/L3/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_8FL6_0211/L3/199:201,
1/L3/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_8FL6_0221/L3/387:390,
1/L3/401:414		No text annotation
homologous
IL_8P9A_243
IL_44923.1
IL_8FL6_0241/L3/443:446,
1/L3/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_49140.1
IL_8FL6_0251/L3/448:450,
1/L3/1297:1298		Single bulged C
geometric
IL_4C7O_003
IL_05642.2
IL_8FL6_0261/L3/459:460,
1/L3/695:697		Single bulged C
geometric
IL_1S03_006
IL_05642.2
IL_8FL6_0271/L3/462:464,
1/L3/691:693		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8FL6_0281/L3/466:472,
1/L3/682:689		No text annotation
IL_8FL6_0321/L3/500:504,
1/L3/654:655		Multiple bulged bases
geometric
IL_1R3E_002
IL_05670.1
IL_8FL6_0331/L3/508:510,
1/L3/649:650		Single bulged A
geometric
IL_6WPI_001
IL_14190.2
IL_8FL6_0341/L3/709:710,
1/L3/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_8FL6_0351/L3/723:724,
1/L3/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8FL6_0361/L3/727:731,
1/L3/938:939		No text annotation
IL_8FL6_0371/L3/732:735,
1/L3/928:937		No text annotation
IL_8FL6_0381/L3/737:739,
1/L3/924:926		No text annotation
geometric
IL_5J7L_341
NA
IL_8FL6_0391/L3/740:742,
1/L3/922:923		Single bulged C
geometric
IL_7KGA_004
IL_05642.2
IL_8FL6_0401/L3/745:752,
1/L3/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_8FL6_0411/L3/1073:1074,
1/L3/1237:1239		Single bulged A
geometric
IL_2VPL_002
IL_14190.2
IL_8FL6_0431/L3/1082:1084,
1/L3/1213:1217		Isolated cWS basepair
geometric
IL_4WF9_034
NA
IL_8FL6_0441/L3/1086:1087,
1/L3/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_8FL6_0451/L3/1093:1094,
1/L3/1201:1203		No text annotation
IL_8FL6_0471/L3/1244:1245,
1/L3/1265:1267		Single bulged G
geometric
IL_4V88_442
NA
IL_8FL6_0481/L3/1357:1360,
1/L3/1379:1382		No text annotation
IL_8FL6_1751/L3/1357:1361,
1/L3/1376:1382		No text annotation
IL_8FL6_0491/L3/1360:1361,
1/L3/1376:1379		Major groove intercalation
geometric
IL_1U9S_003
IL_71421.2
IL_8FL6_0501/L3/1425:1429,
1/L3/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_8FL6_0511/L3/1431:1434,
1/L3/1450:1453		Double sheared
geometric
IL_7RQB_089
NA
IL_8FL6_0521/L3/1467:1468,
1/L3/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_8FL6_0531/L3/1474:1476,
1/L3/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_15011.2
IL_8FL6_0541/L3/1479:1480,
1/L3/1484:1486		Single bulged C
geometric
IL_5J7L_311
NA
IL_8FL6_1761/L3/1520:1522,
1/L3/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8P9A_255
IL_01003.2
IL_8FL6_1771/L3/1522:1526,
1/L3/1648:1655		No text annotation
homologous
IL_8C3A_030
NA
IL_8FL6_0561/L3/1545:1546,
1/L3/1612:1614		Single bulged A
homologous
IL_8C3A_031
NA
IL_8FL6_0571/L3/1550:1551,
1/L3/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_8FL6_0581/L3/1551:1555,
1/L3/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_8FL6_0591/L3/1586:1589,
1/L3/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8FL6_0601/L3/1590:1592,
1/L3/1603:1604		Single bulged U
geometric
IL_7RQB_080
NA
IL_8FL6_0611/L3/1624:1626,
1/L3/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_8FL6_0621/L3/1671:1673,
1/L3/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8FL6_0631/L3/1686:1688,
1/L3/1848:1851		No text annotation
IL_8FL6_0651/L3/1723:1725,
1/L3/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_8FL6_1781/L3/1732:1737,
1/L3/1792:1797		No text annotation
IL_8FL6_0671/L3/1814:1816,
1/L3/1823:1824		Single bulged G
geometric
IL_4V88_442
NA
IL_8FL6_1791/L3/1858:1860,
1/L3/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8FL6_0701/L3/1905:1909,
1/L3/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8FL6_0711/L3/1911:1918,
1/L3/2064:2065		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_8FL6_0721/L3/1918:1920,
1/L3/2063:2064		Single bulged G
geometric
IL_5TBW_037
NA
IL_8FL6_0731/L3/1920:1922,
1/L3/2062:2063		No text annotation
IL_8FL6_0741/L3/1926:1933,
1/L3/2053:2058		No text annotation
homologous
IL_8C3A_054
NA
IL_8FL6_0761/L3/1946:1948,
1/L3/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_8FL6_0771/L3/1957:1965,
1/L3/2022:2026		Kink-turn
homologous
IL_8C3A_057
NA
IL_8FL6_0781/L3/1973:1977,
1/L3/1989:1993		No text annotation
homologous
IL_8C3A_058
NA
IL_8FL6_0791/L3/2001:2005,
1/L3/2014:2016		Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_36931.2
IL_8FL6_0801/L3/2083:2085,
1/L3/2272:2273		No text annotation
IL_8FL6_0811/L3/2290:2292,
1/L3/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_8FL6_0821/L3/2299:2301,
1/L3/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_8FL6_0831/L3/2302:2309,
1/L3/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_8FL6_0841/L3/2312:2314,
1/L3/2325:2326		Single bulged A
geometric
IL_7RQB_033
NA
IL_8FL6_1801/L3/2358:2364,
1/L3/3858:3863		No text annotation
homologous
IL_8C3A_065
NA
IL_8FL6_1811/L3/2415:2419,
1/L3/2427:2429		No text annotation
geometric
IL_6CZR_410
NA
IL_8FL6_0871/L3/2446:2450,
1/L3/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8FL6_0881/L3/2542:2547,
1/L3/2772:2774		No text annotation
geometric
IL_6DME_003
IL_75527.2
IL_8FL6_0891/L3/2549:2550,
1/L3/2768:2770		Single bulged U
geometric
IL_2A64_002
IL_97561.2
IL_8FL6_0901/L3/2589:2593,
1/L3/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_8FL6_0911/L3/2613:2614,
1/L3/2724:2726		Single bulged C
homologous
IL_8C3A_075
NA
IL_8FL6_0921/L3/2614:2615,
1/L3/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_8FL6_0931/L3/2646:2648,
1/L3/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_8FL6_0941/L3/2651:2653,
1/L3/2681:2682		Single bulged G
geometric
IL_5J7L_019
NA
IL_8FL6_0951/L3/2656:2662,
1/L3/2672:2678		No text annotation
homologous
IL_8C3A_079
NA
IL_8FL6_0961/L3/2704:2705,
1/L3/2710:2712		No text annotation
IL_8FL6_1821/L3/2832:2838,
1/L3/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_8FL6_1831/L3/2844:2846,
1/L3/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_8FL6_1841/L3/2847:2850,
1/L3/3840:3841		Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_74641.2
IL_8FL6_1851/L3/2847:2855,
1/L3/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_8FL6_1011/L3/2850:2855,
1/L3/3837:3840		Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_8FL6_1021/L3/2867:2872,
1/L3/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_8FL6_1031/L3/2889:2891,
1/L3/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8FL6_1041/L3/2896:2897,
1/L3/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_8FL6_1051/L3/2901:2903,
1/L3/3591:3598		No text annotation
IL_8FL6_1071/L3/2920:2925,
1/L3/3272:3277		No text annotation
geometric
IL_4V88_462
NA
IL_8FL6_1101/L3/3632:3633,
1/L3/3827:3829		Single bulged A
geometric
IL_4V9F_064
IL_14190.2
IL_8FL6_1111/L3/3660:3665,
1/L3/3677:3684		No text annotation
homologous
IL_8C3A_088
NA
IL_8FL6_1121/L3/3700:3703,
1/L3/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_8FL6_1131/L3/3704:3705,
1/L3/3745:3748		Major groove intercalation
geometric
IL_5TBW_085
NA
IL_8FL6_1151/L3/3708:3710,
1/L3/3741:3742		Stack outside cWW
geometric
IL_5WT1_001
IL_77710.1
IL_8FL6_1861/L3/3708:3714,
1/L3/3739:3742		No text annotation
IL_8FL6_1161/L3/3710:3714,
1/L3/3739:3741		Other IL
geometric
IL_4PDB_001
IL_70784.1
IL_8FL6_1871/L3/3715:3721,
1/L3/3732:3738		No text annotation
homologous
IL_8P9A_316
IL_65359.1
IL_8FL6_1191/L3/3895:3898,
1/L3/4563:4565		No text annotation
homologous
IL_8C3A_096
NA
IL_8FL6_1211/L3/3900:3901,
1/L3/4558:4561		Major groove platform
geometric
IL_4WF9_078
IL_48076.8
IL_8FL6_1231/L3/3913:3915,
1/L3/4388:4389		Single bulged U
homologous
IL_8C3A_098
NA
IL_8FL6_1241/L3/3916:3917,
1/L3/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8FL6_1261/L3/3927:3929,
1/L3/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_8FL6_1271/L3/4082:4088,
1/L3/4161:4164		No text annotation
homologous
IL_5TBW_096
NA
IL_8FL6_1291/L3/4191:4192,
1/L3/4202:4204		Single bulged A
homologous
IL_5TBW_098
NA
IL_8FL6_1301/L3/4243:4245,
1/L3/4263:4267		No text annotation
homologous
IL_8C3A_108
NA
IL_8FL6_1881/L3/4291:4293,
1/L3/4317:4318		Single bulged A
geometric
IL_7A0S_064
IL_14190.2
IL_8FL6_1891/L3/4295:4298,
1/L3/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_8FL6_1331/L3/4347:4350,
1/L3/4364:4365		Single stack bend
geometric
IL_5J7L_032
NA
IL_8FL6_1351/L3/4412:4416,
1/L3/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_8FL6_1901/L3/4456:4458,
1/L3/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_8FL6_1371/L3/4458:4459,
1/L3/4517:4520		No text annotation
homologous
IL_8C3A_117
NA
IL_8FL6_1381/L3/4466:4468,
1/L3/4489:4491		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_8FL6_1911/L3/4466:4470,
1/L3/4485:4491		No text annotation
IL_8FL6_1391/L3/4468:4470,
1/L3/4485:4489		No text annotation
geometric
IL_3DD2_004
IL_09353.1
IL_8FL6_1421/L3/4537:4538,
1/L3/4547:4549		Single bulged A
homologous
IL_8C3A_122
NA
IL_8FL6_1451/L3/4580:4582,
1/L3/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_8FL6_1461/L3/4582:4585,
1/L3/4717:4721		Other IL
geometric
IL_4WF9_054
IL_74317.1
IL_8FL6_1921/L3/4590:4592,
1/L3/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.2
IL_8FL6_1471/L3/4596:4603,
1/L3/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8FL6_1931/L3/4624:4629,
1/L3/4669:4673		No text annotation
IL_8FL6_1941/L3/4632:4637,
1/L3/4662:4666		No text annotation
homologous
IL_8P9A_346
IL_98200.1
IL_8FL6_1501/L3/4638:4640,
1/L3/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.2
IL_8FL6_1511/L3/4641:4642,
1/L3/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_8FL6_1521/L3/4681:4685,
1/L3/4705:4709		UAA/GAN
homologous
IL_5TBW_120
NA
IL_8FL6_1531/L3/4739:4742,
1/L3/4958:4960		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8FL6_1541/L3/4743:4746,
1/L3/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_8FL6_1551/L3/4749:4751,
1/L3/4948:4951		No text annotation
IL_8FL6_1561/L3/4756:4765,
1/L3/4869:4877		No text annotation
IL_8FL6_1571/L3/4769:4771,
1/L3/4863:4865		Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_01003.2
IL_8FL6_1581/L3/4885:4889,
1/L3/4930:4934		Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_71154.2
IL_8FL6_1591/L3/4891:4896,
1/L3/4924:4928		No text annotation
IL_8FL6_1601/L3/4899:4901,
1/L3/4920:4921		No text annotation
IL_8FL6_1951/L3/4972:4975,
1/L3/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_8C3A_135
NA
IL_8FL6_1611/L3/4992:4994,
1/L3/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_01003.2
IL_8FL6_1621/L3/4997:4998,
1/L3/5052:5054		Major groove intercalation
geometric
IL_4WF9_106
IL_77710.1
IL_8FL6_1631/L3/5000:5002,
1/L3/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_8FL6_1641/L3/5003:5009,
1/L3/5039:5044		No text annotation
IL_8FL6_1661/L3/5012:5014,
1/L3/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_8FL6_1671/L3/5014:5017,
1/L3/5032:5035		Double sheared
geometric
IL_4V9F_100
IL_58355.2
IL_8FL6_1681/L4/15:16,
1/L4/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_8FL6_1691/L4/21:27,
1/L4/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8FL6_1701/L4/28:29,
1/L4/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_8FL6_1711/L4/32:36,
1/L4/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_8FL6_1721/L4/71:78,
1/L4/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8FL6_1731/L4/79:81,
1/L4/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_8FL6_1741/L4/82:85,
1/L4/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_8FL6_010Isolated non-canonical cWW pair
IL_8FL6_018Single bulged C
IL_8FL6_019Not an internal loop
IL_8FL6_023Isolated cWH basepair
IL_8FL6_029No text annotation
IL_8FL6_030Single bulged U
IL_8FL6_031Single bulged C
IL_8FL6_042Decoding loop related
IL_8FL6_046Isolated non-canonical cWW pair
IL_8FL6_055No text annotation
IL_8FL6_064No text annotation
IL_8FL6_066No text annotation
IL_8FL6_068No text annotation
IL_8FL6_069Tandem non-canonical cWW pairs
IL_8FL6_075No text annotation
IL_8FL6_085Tandem non-canonical cWW pairs
IL_8FL6_086No text annotation
IL_8FL6_097No text annotation
IL_8FL6_098Stack and bulge
IL_8FL6_099No text annotation
IL_8FL6_100Major groove platform with extra pair
IL_8FL6_106Decoding loop related
IL_8FL6_108Isolated non-canonical cWW pair
IL_8FL6_109Isolated non-canonical cWW pair
IL_8FL6_114No text annotation
IL_8FL6_117No text annotation
IL_8FL6_118Stack and bulge
IL_8FL6_120Isolated cWH basepair
IL_8FL6_122Isolated non-canonical cWW pair
IL_8FL6_125Isolated non-canonical cWW pair
IL_8FL6_128No text annotation
IL_8FL6_131Decoding loop related
IL_8FL6_132No text annotation
IL_8FL6_134Isolated near basepair
IL_8FL6_136No text annotation
IL_8FL6_140Not an internal loop
IL_8FL6_141No text annotation
IL_8FL6_143Isolated non-canonical cWW pair
IL_8FL6_144Not an internal loop
IL_8FL6_148No text annotation
IL_8FL6_149Triple sheared related
IL_8FL6_165Stack and bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8FL6_0121/L1/19:20,
1/L3/380:387,
1/L3/414:415		No text annotation
geometric
J3_5TBW_002
NA
J3_8FL6_0131/L1/19:20,
1/L3/380:390,
1/L3/401:415		No text annotation
geometric
J3_5TBW_062
NA
J3_8FL6_0141/L1/21:24,
1/L3/351:367,
1/L3/374:379		No text annotation
geometric
J3_5TBW_061
NA
J3_8FL6_0151/L1/44:45,
1/L1/58:64,
1/L1/95:99		No text annotation
homologous
J3_8C3A_060
NA
J3_8FL6_0011/L3/112:116,
1/L3/155:160,
1/L3/275:278		No text annotation
J3_8FL6_0161/L3/196:199,
1/L3/215:228,
1/L3/240:244		No text annotation
J3_8FL6_0171/L3/451:455,
1/L3/701:705,
1/L3/1292:1296		No text annotation
J3_8FL6_0021/L3/1531:1537,
1/L3/1622:1624,
1/L3/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_8FL6_0031/L3/1546:1548,
1/L3/1580:1584,
1/L3/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_8FL6_0181/L3/1726:1727,
1/L3/1802:1806,
1/L3/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8FL6_0041/L3/1969:1971,
1/L3/1995:2001,
1/L3/2016:2018		No text annotation
homologous
J3_5TBW_007
NA
J3_8FL6_0051/L3/2393:2399,
1/L3/2805:2807,
1/L3/2819:2822		No text annotation
homologous
J3_8C3A_006
NA
J3_8FL6_0061/L3/2402:2405,
1/L3/2785:2791,
1/L3/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_8FL6_0191/L3/2440:2445,
1/L3/2515:2519,
1/L3/2536:2537		No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_8FL6_0071/L3/2551:2555,
1/L3/2572:2575,
1/L3/2757:2767		No text annotation
J3_8FL6_0201/L3/2575:2576,
1/L3/2585:2589,
1/L3/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_8FL6_0211/L3/2598:2602,
1/L3/2737:2738,
1/L3/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8FL6_0081/L3/3937:3939,
1/L3/4074:4078,
1/L3/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_8FL6_0221/L3/4228:4230,
1/L3/4331:4342,
1/L3/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_8FL6_0091/L3/4241:4243,
1/L3/4267:4269,
1/L3/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_8FL6_0231/L3/4463:4466,
1/L3/4491:4493,
1/L3/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_8FL6_0241/L3/4751:4754,
1/L3/4879:4883,
1/L3/4936:4948		No text annotation
J3_8FL6_0251/L3/4970:4972,
1/L3/4986:4991,
1/L3/5060:5063		No text annotation
J3_8FL6_0261/L4/9:14,
1/L4/65:66,
1/L4/109:110		No text annotation
homologous
J3_8P9A_066
J3_26985.1
J4_8FL6_0011/L3/111:112,
1/L3/278:283,
1/L3/304:310,
1/L3/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8FL6_0021/L3/196:199,
1/L3/215:222,
1/L3/226:228,
1/L3/240:244		No text annotation
J4_8FL6_0031/L3/981:983,
1/L3/1070:1072,
1/L3/1240:1243,
1/L3/1268:1273		No text annotation
J4_8FL6_0041/L3/2365:2371,
1/L3/2389:2391,
1/L3/2824:2829,
1/L3/3856:3857		No text annotation
J4_8FL6_0051/L3/2406:2410,
1/L3/2434:2439,
1/L3/2538:2539,
1/L3/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_8FL6_0061/L3/2618:2619,
1/L3/2637:2642,
1/L3/2692:2698,
1/L3/2718:2719		No text annotation
J4_8FL6_0071/L3/4231:4235,
1/L3/4289:4291,
1/L3/4318:4319,
1/L3/4328:4330		No text annotation
J4_8FL6_0081/L3/4231:4235,
1/L3/4289:4293,
1/L3/4317:4319,
1/L3/4328:4330		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_8FL6_0091/L3/4587:4590,
1/L3/4620:4621,
1/L3/4676:4678,
1/L3/4712:4715		No text annotation
J5_8FL6_0011/L1/35:42,
1/L1/101:106,
1/L1/113:114,
1/L1/136:138,
1/L3/19:21		No text annotation
J5_8FL6_0021/L3/1335:1340,
1/L3/1516:1519,
1/L3/1658:1661,
1/L3/2288:2290,
1/L3/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_8FL6_0031/L3/2855:2863,
1/L3/2887:2888,
1/L3/3613:3614,
1/L3/3618:3626,
1/L3/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_8FL6_0041/L3/3920:3923,
1/L3/4188:4191,
1/L3/4204:4205,
1/L3/4227:4228,
1/L3/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_8FL6_0011/L1/33:35,
1/L3/21:26,
1/L3/57:67,
1/L3/74:78,
1/L3/105:109,
1/L3/332:339		No text annotation
J6_8FL6_0021/L3/1352:1355,
1/L3/1384:1388,
1/L3/1395:1399,
1/L3/1418:1421,
1/L3/1464:1466,
1/L3/1499:1504		No text annotation
J6_8FL6_0031/L3/3920:3923,
1/L3/4188:4191,
1/L3/4204:4205,
1/L3/4227:4230,
1/L3/4331:4342,
1/L3/4370:4381		No text annotation
J7_8FL6_0011/L3/1666:1671,
1/L3/1684:1685,
1/L3/1852:1855,
1/L3/1879:1884,
1/L3/1895:1899,
1/L3/2077:2078,
1/L3/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_8FL6_010No text annotation
J3_8FL6_011No text annotation

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