HL_8FL6_033

3D structure

PDB id

8FL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGCGCGGACGCUACG

Length

38 nucleotides

Bulged bases

8FL6|1|L3|U|2097, 8FL6|1|L3|U|2267, 8FL6|1|L3|C|2269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL6|1|L3|C|2087
8FL6|1|L3|A|2088
8FL6|1|L3|G|2089
8FL6|1|L3|U|2090
8FL6|1|L3|C|2091
8FL6|1|L3|G|2092
8FL6|1|L3|A|2093
8FL6|1|L3|G|2094
8FL6|1|L3|A|2095
8FL6|1|L3|G|2096
8FL6|1|L3|U|2097
8FL6|1|L3|G|2098
8FL6|1|L3|G|2099
8FL6|1|L3|A|2100
8FL6|1|L3|C|2101
8FL6|1|L3|G|2102
8FL6|1|L3|G|2103
8FL6|1|L3|G|2104
8FL6|1|L3|A|2105
8FL6|1|L3|G|2106
8FL6|1|L3|C|2107
8FL6|1|L3|G|2108
8FL6|1|L3|G|2109
8FL6|1|L3|C|2110
8FL6|1|L3|G|2111
8FL6|1|L3|C|2258
8FL6|1|L3|G|2259
8FL6|1|L3|C|2260
8FL6|1|L3|G|2261
8FL6|1|L3|G|2262
8FL6|1|L3|A|2263
8FL6|1|L3|C|2264
8FL6|1|L3|G|2265
8FL6|1|L3|C|2266
8FL6|1|L3|U|2267
8FL6|1|L3|A|2268
8FL6|1|L3|C|2269
8FL6|1|L3|G|2270

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18

Chain LL

60S ribosomal protein L28

Chain LM

60S ribosomal protein L29

Chain SA

60S ribosomal protein L4

Chain SC

60S ribosomal protein L6

Chain SD

60S ribosomal protein L7