HL_8FL9_008

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCGG

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_008 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1637

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FL9|1|L3|C|130
8FL9|1|L3|C|131
8FL9|1|L3|G|132
8FL9|1|L3|G|138

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain LS

60S ribosomal protein L35