Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8FL9_0011/L1/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_8FL9_0021/L1/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_8FL9_0031/L1/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_8FL9_0051/L3/37:44No text annotation
homologous
HL_8C3A_001
NA
HL_8FL9_0061/L3/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_8FL9_0071/L3/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_8FL9_0091/L3/204:211T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_8FL9_0101/L3/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_8FL9_0111/L3/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8FL9_0121/L3/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_8FL9_0131/L3/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8FL9_0141/L3/368:373GNRA
homologous
HL_8C3A_010
NA
HL_8FL9_0751/L3/393:398GNRA
homologous
HL_8C3A_011
NA
HL_8FL9_0761/L3/1364:1373No text annotation
HL_8FL9_0211/L3/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_8FL9_0231/L3/1480:1484Mini UNCG
geometric
HL_4V88_192
NA
HL_8FL9_0251/L3/1593:1602No text annotation
homologous
HL_8C3A_020
NA
HL_8FL9_0261/L3/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_8FL9_0271/L3/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_8FL9_0281/L3/1816:1823No text annotation
geometric
HL_5TBW_024
NA
HL_8FL9_0291/L3/1886:1893No text annotation
HL_8FL9_0301/L3/1978:1988No text annotation
homologous
HL_8C3A_027
NA
HL_8FL9_0311/L3/2006:2013GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8FL9_0331/L3/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_8FL9_0341/L3/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8FL9_0351/L3/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8FL9_0361/L3/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_8FL9_0371/L3/2469:2471No text annotation
HL_8FL9_0391/L3/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_8FL9_0411/L3/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_8FL9_0771/L3/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_8FL9_0431/L3/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_8FL9_0441/L3/2705:2710No text annotation
geometric
HL_5NFV_001
HL_69752.3
HL_8FL9_0451/L3/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_8FL9_0461/L3/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_8FL9_0471/L3/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_8FL9_0481/L3/2872:2877UNCG
geometric
HL_4LFB_009
HL_61337.1
HL_8FL9_0491/L3/3614:3618No text annotation
geometric
HL_6U8D_003
HL_32346.5
HL_8FL9_0781/L3/3639:3649No text annotation
homologous
HL_8C3A_046
NA
HL_8FL9_0511/L3/3668:3674GNRA
geometric
HL_4PQV_001
NA
HL_8FL9_0791/L3/3724:3729GNRA
homologous
HL_8P9A_159
HL_34789.1
HL_8FL9_0571/L3/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_8FL9_0581/L3/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_8FL9_0591/L3/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_8FL9_0601/L3/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_8FL9_0611/L3/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_8FL9_0621/L3/4352:4362Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_8FL9_0641/L3/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_8FL9_0651/L3/4495:4505No text annotation
geometric
HL_6GSK_218
HL_14063.1
HL_8FL9_0661/L3/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_8FL9_0671/L3/4603:4608GNRA
homologous
HL_5TBW_065
NA
HL_8FL9_0681/L3/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8FL9_0691/L3/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_8FL9_0701/L3/4907:4914No text annotation
geometric
HL_5TBW_069
NA
HL_8FL9_0711/L3/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_8FL9_0811/L4/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8FL9_0731/L4/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_8FL9_0741/L4/86:91GNRA
homologous
HL_5TBW_186
NA

Problematic loops

#loop idProblemSequence
HL_8FL9_004No text annotation
HL_8FL9_008No text annotation
HL_8FL9_015No text annotation
HL_8FL9_016No text annotation
HL_8FL9_017No text annotation
HL_8FL9_018No text annotation
HL_8FL9_019No text annotation
HL_8FL9_020No text annotation
HL_8FL9_022No text annotation
HL_8FL9_024GNRA
HL_8FL9_032No text annotation
HL_8FL9_038No text annotation
HL_8FL9_040GNRA
HL_8FL9_042No text annotation
HL_8FL9_050No text annotation
HL_8FL9_052No text annotation
HL_8FL9_053No text annotation
HL_8FL9_054No text annotation
HL_8FL9_055No text annotation
HL_8FL9_056No text annotation
HL_8FL9_063No text annotation
HL_8FL9_080No text annotation
HL_8FL9_072No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8FL9_0011/L1/13:19,
1/L3/415:421
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_8FL9_0021/L1/25:26,
1/L3/348:350
Single bulged A
homologous
IL_5TBW_013
NA
IL_8FL9_0031/L1/32:33,
1/L3/339:342
Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
NA
IL_8FL9_0041/L1/64:66,
1/L1/92:95
Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8FL9_0051/L1/139:141,
1/L3/16:18
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_8FL9_0061/L1/143:144,
1/L3/12:14
Single bulged U
homologous
IL_5TBW_003
NA
IL_8FL9_0071/L1/149:151,
1/L3/6:7
Single bulged C
homologous
IL_5TBW_002
NA
IL_8FL9_0081/L3/26:27,
1/L3/55:57
No text annotation
homologous
IL_8C3A_004
NA
IL_8FL9_0091/L3/30:37,
1/L3/44:52
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_8FL9_0101/L3/81:88,
1/L3/96:102
No text annotation
homologous
IL_8C3A_006
NA
IL_8FL9_0111/L3/118:122,
1/L3/147:153
No text annotation
IL_8FL9_0121/L3/125:126,
1/L3/142:144
Single bulged C
geometric
IL_1DQF_001
NA
IL_8FL9_0131/L3/169:173,
1/L3/263:266
No text annotation
IL_8FL9_0161/L3/195:196,
1/L3/244:246
Single bulged C
geometric
IL_1DQF_001
NA
IL_8FL9_0171/L3/199:201,
1/L3/214:215
Single bulged U
homologous
IL_8C3A_013
NA
IL_8FL9_0181/L3/387:390,
1/L3/401:414
No text annotation
homologous
IL_8P9A_243
IL_44923.1
IL_8FL9_0201/L3/443:446,
1/L3/1300:1304
No text annotation
geometric
IL_7MLW_007
NA
IL_8FL9_0211/L3/448:450,
1/L3/1297:1298
Single bulged C
geometric
IL_4C7O_003
NA
IL_8FL9_0221/L3/459:460,
1/L3/695:697
Single bulged C
geometric
IL_1S03_006
IL_05642.1
IL_8FL9_0231/L3/462:464,
1/L3/691:693
Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8FL9_0241/L3/466:472,
1/L3/682:689
No text annotation
IL_8FL9_0281/L3/500:504,
1/L3/654:655
Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8FL9_0291/L3/508:510,
1/L3/649:650
Single bulged A
geometric
IL_6WPI_001
IL_14190.1
IL_8FL9_0301/L3/709:710,
1/L3/1286:1288
Single bulged G
geometric
IL_4LFB_036
IL_28408.1
IL_8FL9_0311/L3/723:724,
1/L3/942:945
Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8FL9_0321/L3/727:731,
1/L3/938:939
No text annotation
IL_8FL9_0331/L3/732:735,
1/L3/928:937
No text annotation
IL_8FL9_0341/L3/737:739,
1/L3/924:926
No text annotation
geometric
IL_5J7L_341
NA
IL_8FL9_0351/L3/740:742,
1/L3/922:923
Single bulged C
geometric
IL_7KGA_004
NA
IL_8FL9_0361/L3/745:752,
1/L3/911:919
No text annotation
geometric
IL_5TBW_020
NA
IL_8FL9_0371/L3/1073:1074,
1/L3/1237:1239
Single bulged A
geometric
IL_2VPL_002
IL_14190.1
IL_8FL9_0401/L3/1086:1087,
1/L3/1209:1211
Single bulged C
geometric
IL_3W3S_001
NA
IL_8FL9_0431/L3/1244:1245,
1/L3/1265:1267
Single bulged G
geometric
IL_4V88_442
NA
IL_8FL9_0441/L3/1357:1360,
1/L3/1379:1382
No text annotation
IL_8FL9_1691/L3/1357:1361,
1/L3/1376:1382
No text annotation
IL_8FL9_0451/L3/1360:1361,
1/L3/1376:1379
Major groove intercalation
geometric
IL_1NBS_009
IL_71421.1
IL_8FL9_0461/L3/1425:1429,
1/L3/1455:1460
Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_8FL9_0471/L3/1431:1434,
1/L3/1450:1453
Double sheared
geometric
IL_7RQB_089
NA
IL_8FL9_0481/L3/1467:1468,
1/L3/1496:1498
Single bulged A
homologous
IL_5TBW_024
NA
IL_8FL9_0491/L3/1474:1476,
1/L3/1489:1490
Single stack bend
geometric
IL_7A0S_005
IL_15011.1
IL_8FL9_0501/L3/1479:1480,
1/L3/1484:1486
No text annotation
IL_8FL9_1701/L3/1520:1522,
1/L3/1655:1657
Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8FL9_1711/L3/1522:1526,
1/L3/1648:1655
No text annotation
homologous
IL_8C3A_030
NA
IL_8FL9_0521/L3/1545:1546,
1/L3/1612:1614
Single bulged A
homologous
IL_8C3A_031
NA
IL_8FL9_0531/L3/1550:1551,
1/L3/1576:1578
Single bulged G
geometric
IL_4V9F_026
IL_28408.1
IL_8FL9_0541/L3/1551:1555,
1/L3/1572:1576
Triple sheared
homologous
IL_8C3A_033
NA
IL_8FL9_0551/L3/1586:1589,
1/L3/1605:1607
Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8FL9_0561/L3/1590:1592,
1/L3/1603:1604
Single bulged U
geometric
IL_7RQB_080
NA
IL_8FL9_0571/L3/1624:1626,
1/L3/1636:1640
No text annotation
homologous
IL_8C3A_036
NA
IL_8FL9_0581/L3/1671:1673,
1/L3/1682:1684
Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8FL9_0591/L3/1686:1688,
1/L3/1848:1851
No text annotation
IL_8FL9_0611/L3/1723:1725,
1/L3/1838:1839
Single bulged G
homologous
IL_8C3A_040
NA
IL_8FL9_1721/L3/1732:1737,
1/L3/1792:1797
No text annotation
IL_8FL9_0631/L3/1814:1816,
1/L3/1823:1824
Single bulged G
homologous
IL_8C3A_048
NA
IL_8FL9_1731/L3/1858:1860,
1/L3/1874:1876
Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8FL9_0661/L3/1905:1909,
1/L3/2067:2071
UAA/GAN
homologous
IL_8C3A_051
NA
IL_8FL9_0671/L3/1911:1918,
1/L3/2064:2065
SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_8FL9_0681/L3/1918:1920,
1/L3/2063:2064
Single bulged G
geometric
IL_5TBW_037
NA
IL_8FL9_0691/L3/1920:1922,
1/L3/2062:2063
No text annotation
IL_8FL9_0701/L3/1926:1933,
1/L3/2053:2058
No text annotation
geometric
IL_5TBW_051
NA
IL_8FL9_0721/L3/1946:1948,
1/L3/2035:2036
Single bulged U
homologous
IL_5TBW_053
NA
IL_8FL9_0731/L3/1957:1965,
1/L3/2022:2026
Kink-turn
homologous
IL_5TBW_054
NA
IL_8FL9_0741/L3/1973:1977,
1/L3/1989:1993
No text annotation
homologous
IL_8C3A_058
NA
IL_8FL9_0751/L3/2001:2005,
1/L3/2014:2016
Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_8FL9_0761/L3/2083:2085,
1/L3/2272:2273
No text annotation
IL_8FL9_0771/L3/2290:2292,
1/L3/2342:2345
No text annotation
homologous
IL_8C3A_061
NA
IL_8FL9_0781/L3/2299:2301,
1/L3/2334:2335
Single bulged A
homologous
IL_8C3A_062
NA
IL_8FL9_0791/L3/2302:2309,
1/L3/2329:2333
Kink-turn
homologous
IL_8C3A_063
NA
IL_8FL9_0801/L3/2312:2314,
1/L3/2325:2326
Single bulged A
geometric
IL_7RQB_033
NA
IL_8FL9_1741/L3/2358:2364,
1/L3/3858:3863
No text annotation
homologous
IL_8C3A_065
NA
IL_8FL9_1751/L3/2415:2419,
1/L3/2427:2429
No text annotation
geometric
IL_6CZR_410
NA
IL_8FL9_0831/L3/2446:2450,
1/L3/2509:2514
UAA/GAN
homologous
IL_8C3A_067
NA
IL_8FL9_0841/L3/2542:2547,
1/L3/2772:2774
No text annotation
geometric
IL_6DME_003
IL_75527.1
IL_8FL9_0851/L3/2549:2550,
1/L3/2768:2770
Single bulged U
geometric
IL_5TBW_053
NA
IL_8FL9_0861/L3/2589:2593,
1/L3/2752:2756
Triple sheared
homologous
IL_5TBW_067
NA
IL_8FL9_0871/L3/2613:2614,
1/L3/2724:2726
Single bulged C
homologous
IL_8C3A_075
NA
IL_8FL9_0881/L3/2614:2615,
1/L3/2722:2724
Single stack bend
homologous
IL_8C3A_076
NA
IL_8FL9_0891/L3/2646:2648,
1/L3/2685:2688
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_8FL9_0901/L3/2651:2653,
1/L3/2681:2682
Single bulged G
geometric
IL_3NDB_004
NA
IL_8FL9_0911/L3/2656:2662,
1/L3/2672:2678
Kink-turn
homologous
IL_5TBW_073
NA
IL_8FL9_0921/L3/2704:2705,
1/L3/2710:2712
No text annotation
IL_8FL9_1761/L3/2832:2838,
1/L3/3850:3853
No text annotation
homologous
IL_8C3A_080
NA
IL_8FL9_1771/L3/2844:2846,
1/L3/3842:3844
No text annotation
homologous
IL_8C3A_081
NA
IL_8FL9_1781/L3/2847:2850,
1/L3/3840:3841
Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_74641.1
IL_8FL9_1791/L3/2847:2855,
1/L3/3837:3841
No text annotation
homologous
IL_8C3A_484
NA
IL_8FL9_0971/L3/2850:2855,
1/L3/3837:3840
No text annotation
homologous
IL_8C3A_083
NA
IL_8FL9_0981/L3/2867:2872,
1/L3/2877:2883
No text annotation
homologous
IL_8C3A_084
NA
IL_8FL9_0991/L3/2889:2891,
1/L3/3610:3612
Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8FL9_1001/L3/2896:2897,
1/L3/3602:3605
No text annotation
homologous
IL_8C3A_086
NA
IL_8FL9_1011/L3/2901:2903,
1/L3/3591:3598
No text annotation
IL_8FL9_1041/L3/3632:3633,
1/L3/3827:3829
Single bulged A
geometric
IL_4V9F_064
IL_14190.1
IL_8FL9_1051/L3/3660:3665,
1/L3/3677:3684
No text annotation
homologous
IL_8C3A_088
NA
IL_8FL9_1061/L3/3700:3703,
1/L3/3749:3750
No text annotation
homologous
IL_8C3A_089
NA
IL_8FL9_1071/L3/3704:3705,
1/L3/3745:3748
Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8FL9_1091/L3/3708:3710,
1/L3/3741:3742
Stack outside cWW
geometric
IL_5WT1_001
IL_78536.1
IL_8FL9_1801/L3/3708:3714,
1/L3/3739:3742
No text annotation
IL_8FL9_1101/L3/3710:3714,
1/L3/3739:3741
Other IL
geometric
IL_4PDB_001
NA
IL_8FL9_1811/L3/3715:3721,
1/L3/3732:3738
No text annotation
homologous
IL_8P9A_316
IL_65359.1
IL_8FL9_1131/L3/3895:3898,
1/L3/4563:4565
Major groove platform with extra pair
geometric
IL_5TBW_091
NA
IL_8FL9_1151/L3/3900:3901,
1/L3/4558:4561
Major groove platform
geometric
IL_4WF9_078
IL_48076.7
IL_8FL9_1171/L3/3913:3915,
1/L3/4388:4389
Single bulged U
homologous
IL_8C3A_098
NA
IL_8FL9_1181/L3/3916:3917,
1/L3/4384:4387
Minor groove platform
homologous
IL_5TBW_094
NA
IL_8FL9_1201/L3/3927:3929,
1/L3/4181:4184
No text annotation
homologous
IL_8C3A_100
NA
IL_8FL9_1211/L3/4082:4088,
1/L3/4161:4164
No text annotation
homologous
IL_5TBW_096
NA
IL_8FL9_1231/L3/4191:4192,
1/L3/4202:4204
Single bulged A
homologous
IL_5TBW_098
NA
IL_8FL9_1241/L3/4243:4245,
1/L3/4263:4267
No text annotation
homologous
IL_8C3A_108
NA
IL_8FL9_1821/L3/4291:4293,
1/L3/4317:4318
Single bulged A
geometric
IL_7A0S_064
IL_14190.1
IL_8FL9_1831/L3/4295:4298,
1/L3/4312:4315
Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_8FL9_1271/L3/4347:4350,
1/L3/4364:4365
Single stack bend
geometric
IL_5J7L_032
NA
IL_8FL9_1291/L3/4412:4416,
1/L3/4426:4430
No text annotation
homologous
IL_8C3A_114
NA
IL_8FL9_1841/L3/4456:4458,
1/L3/4520:4524
No text annotation
homologous
IL_8C3A_116
NA
IL_8FL9_1311/L3/4458:4459,
1/L3/4517:4520
Multiple bulged bases
geometric
IL_4V9F_088
IL_44609.1
IL_8FL9_1321/L3/4466:4468,
1/L3/4489:4491
Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_8FL9_1851/L3/4466:4470,
1/L3/4485:4491
No text annotation
IL_8FL9_1331/L3/4468:4470,
1/L3/4485:4489
No text annotation
geometric
IL_3DD2_004
NA
IL_8FL9_1361/L3/4537:4538,
1/L3/4547:4549
Single bulged A
homologous
IL_8C3A_122
NA
IL_8FL9_1391/L3/4580:4582,
1/L3/4721:4723
Isolated non-canonical cWW pair
geometric
IL_5H1K_001
NA
IL_8FL9_1401/L3/4582:4585,
1/L3/4717:4721
Other IL
geometric
IL_4WF9_054
IL_74317.1
IL_8FL9_1861/L3/4590:4592,
1/L3/4618:4620
Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.1
IL_8FL9_1411/L3/4596:4603,
1/L3/4608:4614
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8FL9_1871/L3/4624:4629,
1/L3/4669:4673
No text annotation
IL_8FL9_1881/L3/4632:4637,
1/L3/4662:4666
No text annotation
homologous
IL_8P9A_346
IL_98200.1
IL_8FL9_1441/L3/4638:4640,
1/L3/4659:4661
Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.1
IL_8FL9_1451/L3/4641:4642,
1/L3/4655:4658
Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_8FL9_1461/L3/4681:4685,
1/L3/4705:4709
UAA/GAN
homologous
IL_5TBW_120
NA
IL_8FL9_1471/L3/4739:4742,
1/L3/4958:4960
Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8FL9_1481/L3/4743:4746,
1/L3/4954:4957
Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_8FL9_1491/L3/4749:4751,
1/L3/4948:4951
No text annotation
IL_8FL9_1501/L3/4756:4765,
1/L3/4869:4877
No text annotation
IL_8FL9_1511/L3/4769:4771,
1/L3/4863:4865
Isolated non-canonical cWW pair
geometric
IL_3RG5_002
IL_68118.1
IL_8FL9_1521/L3/4885:4889,
1/L3/4930:4934
Triple non-canonical cWW pairs
geometric
IL_8S95_002
NA
IL_8FL9_1531/L3/4891:4896,
1/L3/4924:4928
No text annotation
IL_8FL9_1891/L3/4972:4975,
1/L3/4983:4986
Tandem non-canonical cWW pairs
geometric
IL_3TZR_003
NA
IL_8FL9_1551/L3/4992:4994,
1/L3/5057:5059
Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_01003.1
IL_8FL9_1561/L3/4997:4998,
1/L3/5052:5054
Major groove intercalation
geometric
IL_4WF9_106
IL_78536.1
IL_8FL9_1571/L3/5000:5002,
1/L3/5045:5050
Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_8FL9_1581/L3/5003:5009,
1/L3/5039:5044
No text annotation
IL_8FL9_1601/L3/5012:5014,
1/L3/5035:5036
Single bulged C
geometric
IL_4WF9_035
IL_05642.1
IL_8FL9_1611/L3/5014:5017,
1/L3/5032:5035
Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_8FL9_1621/L4/15:16,
1/L4/62:64
Single bulged A
homologous
IL_5TBW_372
NA
IL_8FL9_1631/L4/21:27,
1/L4/52:57
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8FL9_1641/L4/28:29,
1/L4/48:51
Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_8FL9_1651/L4/32:36,
1/L4/41:45
Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_8FL9_1661/L4/71:78,
1/L4/98:104
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8FL9_1671/L4/79:81,
1/L4/95:97
Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_8FL9_1681/L4/82:85,
1/L4/92:94
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_8FL9_014Single bulged C
IL_8FL9_015Not an internal loop
IL_8FL9_019Isolated non-canonical cWW pair
IL_8FL9_025No text annotation
IL_8FL9_026Single bulged U
IL_8FL9_027Single bulged C
IL_8FL9_038No text annotation
IL_8FL9_039Isolated near basepair
IL_8FL9_041No text annotation
IL_8FL9_042Isolated non-canonical cWW pair
IL_8FL9_051No text annotation
IL_8FL9_060No text annotation
IL_8FL9_062No text annotation
IL_8FL9_064No text annotation
IL_8FL9_065Tandem non-canonical cWW pairs
IL_8FL9_071No text annotation
IL_8FL9_081Tandem non-canonical cWW pairs
IL_8FL9_082No text annotation
IL_8FL9_093No text annotation
IL_8FL9_094Isolated non-canonical cWW pair
IL_8FL9_095No text annotation
IL_8FL9_096Major groove platform with extra pair
IL_8FL9_102Isolated non-canonical cWW pair
IL_8FL9_103Isolated cWH basepair
IL_8FL9_108No text annotation
IL_8FL9_111No text annotation
IL_8FL9_112Stack and bulge
IL_8FL9_114Isolated non-canonical cWW pair
IL_8FL9_116Stack and bulge
IL_8FL9_119Isolated non-canonical cWW pair
IL_8FL9_122No text annotation
IL_8FL9_125Decoding loop related
IL_8FL9_126No text annotation
IL_8FL9_128Not an internal loop
IL_8FL9_130No text annotation
IL_8FL9_134Not an internal loop
IL_8FL9_135No text annotation
IL_8FL9_137Isolated non-canonical cWW pair
IL_8FL9_138Not an internal loop
IL_8FL9_142No text annotation
IL_8FL9_143Triple sheared related
IL_8FL9_154No text annotation
IL_8FL9_159Stack and bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8FL9_0131/L1/19:20,
1/L3/380:387,
1/L3/414:415
No text annotation
geometric
J3_5TBW_002
NA
J3_8FL9_0141/L1/19:20,
1/L3/380:390,
1/L3/401:415
No text annotation
geometric
J3_5TBW_062
NA
J3_8FL9_0151/L1/21:24,
1/L3/351:367,
1/L3/374:379
No text annotation
geometric
J3_5TBW_061
NA
J3_8FL9_0161/L1/44:45,
1/L1/58:64,
1/L1/95:99
No text annotation
homologous
J3_8C3A_060
NA
J3_8FL9_0011/L3/112:116,
1/L3/155:160,
1/L3/275:278
No text annotation
J3_8FL9_0171/L3/196:199,
1/L3/215:228,
1/L3/240:244
No text annotation
J3_8FL9_0181/L3/451:455,
1/L3/701:705,
1/L3/1292:1296
No text annotation
J3_8FL9_0021/L3/1531:1537,
1/L3/1622:1624,
1/L3/1640:1643
No text annotation
homologous
J3_8C3A_003
NA
J3_8FL9_0031/L3/1546:1548,
1/L3/1580:1584,
1/L3/1609:1612
No text annotation
homologous
J3_8C3A_004
NA
J3_8FL9_0191/L3/1726:1727,
1/L3/1802:1806,
1/L3/1832:1837
No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8FL9_0041/L3/1969:1971,
1/L3/1995:2001,
1/L3/2016:2018
No text annotation
homologous
J3_5TBW_007
NA
J3_8FL9_0051/L3/2393:2399,
1/L3/2805:2807,
1/L3/2819:2822
No text annotation
homologous
J3_8C3A_006
NA
J3_8FL9_0061/L3/2402:2405,
1/L3/2785:2791,
1/L3/2800:2802
No text annotation
homologous
J3_5TBW_009
NA
J3_8FL9_0201/L3/2440:2445,
1/L3/2515:2519,
1/L3/2536:2537
No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_8FL9_0071/L3/2551:2555,
1/L3/2572:2575,
1/L3/2757:2767
No text annotation
J3_8FL9_0211/L3/2575:2576,
1/L3/2585:2589,
1/L3/2756:2757
No text annotation
homologous
J3_8C3A_054
NA
J3_8FL9_0221/L3/2598:2602,
1/L3/2737:2738,
1/L3/2742:2747
No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8FL9_0081/L3/3937:3939,
1/L3/4074:4078,
1/L3/4168:4173
No text annotation
geometric
J3_7A0S_009
J3_17460.1
J3_8FL9_0231/L3/4228:4230,
1/L3/4331:4342,
1/L3/4370:4375
No text annotation
homologous
J3_8C3A_056
NA
J3_8FL9_0091/L3/4241:4243,
1/L3/4267:4269,
1/L3/4278:4283
No text annotation
homologous
J3_5TBW_013
NA
J3_8FL9_0241/L3/4463:4466,
1/L3/4491:4493,
1/L3/4507:4513
No text annotation
homologous
J3_8C3A_011
NA
J3_8FL9_0251/L3/4751:4754,
1/L3/4879:4883,
1/L3/4936:4948
No text annotation
J3_8FL9_0261/L3/4970:4972,
1/L3/4986:4991,
1/L3/5060:5063
No text annotation
J3_8FL9_0271/L4/9:14,
1/L4/65:66,
1/L4/109:110
No text annotation
homologous
J3_8P9A_066
J3_26985.1
J4_8FL9_0011/L3/111:112,
1/L3/278:283,
1/L3/304:310,
1/L3/327:330
No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8FL9_0021/L3/196:199,
1/L3/215:222,
1/L3/226:228,
1/L3/240:244
No text annotation
J4_8FL9_0031/L3/981:983,
1/L3/1070:1072,
1/L3/1240:1243,
1/L3/1268:1273
No text annotation
J4_8FL9_0101/L3/2365:2371,
1/L3/2389:2391,
1/L3/2824:2829,
1/L3/3856:3857
No text annotation
J4_8FL9_0051/L3/2406:2410,
1/L3/2434:2439,
1/L3/2538:2539,
1/L3/2777:2784
No text annotation
homologous
J4_8C3A_004
NA
J4_8FL9_0061/L3/2618:2619,
1/L3/2637:2642,
1/L3/2692:2698,
1/L3/2718:2719
No text annotation
J4_8FL9_0071/L3/4231:4235,
1/L3/4289:4291,
1/L3/4318:4319,
1/L3/4328:4330
No text annotation
J4_8FL9_0081/L3/4231:4235,
1/L3/4289:4293,
1/L3/4317:4319,
1/L3/4328:4330
No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_8FL9_0091/L3/4587:4590,
1/L3/4620:4621,
1/L3/4676:4678,
1/L3/4712:4715
No text annotation
J5_8FL9_0011/L1/35:42,
1/L1/101:106,
1/L1/113:114,
1/L1/136:138,
1/L3/19:21
No text annotation
J5_8FL9_0021/L3/1335:1340,
1/L3/1516:1519,
1/L3/1658:1661,
1/L3/2288:2290,
1/L3/2345:2351
No text annotation
homologous
J5_8C3A_002
NA
J5_8FL9_0031/L3/2855:2863,
1/L3/2887:2888,
1/L3/3613:3614,
1/L3/3618:3626,
1/L3/3835:3837
No text annotation
homologous
J5_8C3A_004
NA
J5_8FL9_0041/L3/3920:3923,
1/L3/4188:4191,
1/L3/4204:4205,
1/L3/4227:4228,
1/L3/4375:4381
No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_8FL9_0011/L1/33:35,
1/L3/21:26,
1/L3/57:67,
1/L3/74:78,
1/L3/105:109,
1/L3/332:339
No text annotation
J6_8FL9_0021/L3/1352:1355,
1/L3/1384:1388,
1/L3/1395:1399,
1/L3/1418:1421,
1/L3/1464:1466,
1/L3/1499:1504
No text annotation
J6_8FL9_0031/L3/3920:3923,
1/L3/4188:4191,
1/L3/4204:4205,
1/L3/4227:4230,
1/L3/4331:4342,
1/L3/4370:4381
No text annotation
J7_8FL9_0011/L3/1666:1671,
1/L3/1684:1685,
1/L3/1852:1855,
1/L3/1879:1884,
1/L3/1895:1899,
1/L3/2077:2078,
1/L3/2278:2283
No text annotation

Problematic loops

#loop idProblemSequence
J3_8FL9_010No text annotation
J3_8FL9_011No text annotation
J3_8FL9_012No text annotation
J4_8FL9_004No text annotation

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