8FL9 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_8FL9_001 | 1/L1/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
HL_8FL9_002 | 1/L1/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
HL_8FL9_003 | 1/L1/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
HL_8FL9_005 | 1/L3/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
HL_8FL9_006 | 1/L3/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
HL_8FL9_007 | 1/L3/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
HL_8FL9_009 | 1/L3/204:211 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
HL_8FL9_010 | 1/L3/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
HL_8FL9_011 | 1/L3/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
HL_8FL9_012 | 1/L3/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
HL_8FL9_013 | 1/L3/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
HL_8FL9_014 | 1/L3/368:373 | GNRA | homologous HL_8C3A_010 NA | |
HL_8FL9_075 | 1/L3/393:398 | GNRA | homologous HL_8C3A_011 NA | |
HL_8FL9_076 | 1/L3/1364:1373 | No text annotation | ||
HL_8FL9_021 | 1/L3/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
HL_8FL9_023 | 1/L3/1480:1484 | Mini UNCG | geometric HL_4V88_192 NA | |
HL_8FL9_025 | 1/L3/1593:1602 | No text annotation | homologous HL_8C3A_020 NA | |
HL_8FL9_026 | 1/L3/1627:1635 | No text annotation | homologous HL_5TBW_021 NA | |
HL_8FL9_027 | 1/L3/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
HL_8FL9_028 | 1/L3/1816:1823 | No text annotation | geometric HL_5TBW_024 NA | |
HL_8FL9_029 | 1/L3/1886:1893 | No text annotation | ||
HL_8FL9_030 | 1/L3/1978:1988 | No text annotation | homologous HL_8C3A_027 NA | |
HL_8FL9_031 | 1/L3/2006:2013 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
HL_8FL9_033 | 1/L3/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
HL_8FL9_034 | 1/L3/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
HL_8FL9_035 | 1/L3/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
HL_8FL9_036 | 1/L3/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
HL_8FL9_037 | 1/L3/2469:2471 | No text annotation | ||
HL_8FL9_039 | 1/L3/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
HL_8FL9_041 | 1/L3/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
HL_8FL9_077 | 1/L3/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
HL_8FL9_043 | 1/L3/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
HL_8FL9_044 | 1/L3/2705:2710 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
HL_8FL9_045 | 1/L3/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
HL_8FL9_046 | 1/L3/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
HL_8FL9_047 | 1/L3/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
HL_8FL9_048 | 1/L3/2872:2877 | UNCG | geometric HL_4LFB_009 HL_61337.1 | |
HL_8FL9_049 | 1/L3/3614:3618 | No text annotation | geometric HL_6U8D_003 HL_32346.5 | |
HL_8FL9_078 | 1/L3/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
HL_8FL9_051 | 1/L3/3668:3674 | GNRA | geometric HL_4PQV_001 NA | |
HL_8FL9_079 | 1/L3/3724:3729 | GNRA | homologous HL_8P9A_159 HL_34789.1 | |
HL_8FL9_057 | 1/L3/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
HL_8FL9_058 | 1/L3/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
HL_8FL9_059 | 1/L3/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
HL_8FL9_060 | 1/L3/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
HL_8FL9_061 | 1/L3/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
HL_8FL9_062 | 1/L3/4352:4362 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
HL_8FL9_064 | 1/L3/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
HL_8FL9_065 | 1/L3/4495:4505 | No text annotation | geometric HL_6GSK_218 HL_14063.1 | |
HL_8FL9_066 | 1/L3/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
HL_8FL9_067 | 1/L3/4603:4608 | GNRA | homologous HL_5TBW_065 NA | |
HL_8FL9_068 | 1/L3/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
HL_8FL9_069 | 1/L3/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
HL_8FL9_070 | 1/L3/4907:4914 | No text annotation | geometric HL_5TBW_069 NA | |
HL_8FL9_071 | 1/L3/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
HL_8FL9_081 | 1/L4/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
HL_8FL9_073 | 1/L4/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
HL_8FL9_074 | 1/L4/86:91 | GNRA | homologous HL_5TBW_186 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_8FL9_004 | No text annotation | ||
HL_8FL9_008 | No text annotation | ||
HL_8FL9_015 | No text annotation | ||
HL_8FL9_016 | No text annotation | ||
HL_8FL9_017 | No text annotation | ||
HL_8FL9_018 | No text annotation | ||
HL_8FL9_019 | No text annotation | ||
HL_8FL9_020 | No text annotation | ||
HL_8FL9_022 | No text annotation | ||
HL_8FL9_024 | GNRA | ||
HL_8FL9_032 | No text annotation | ||
HL_8FL9_038 | No text annotation | ||
HL_8FL9_040 | GNRA | ||
HL_8FL9_042 | No text annotation | ||
HL_8FL9_050 | No text annotation | ||
HL_8FL9_052 | No text annotation | ||
HL_8FL9_053 | No text annotation | ||
HL_8FL9_054 | No text annotation | ||
HL_8FL9_055 | No text annotation | ||
HL_8FL9_056 | No text annotation | ||
HL_8FL9_063 | No text annotation | ||
HL_8FL9_080 | No text annotation | ||
HL_8FL9_072 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_8FL9_001 | 1/L1/13:19, 1/L3/415:421 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
IL_8FL9_002 | 1/L1/25:26, 1/L3/348:350 | Single bulged A | homologous IL_5TBW_013 NA | |
IL_8FL9_003 | 1/L1/32:33, 1/L3/339:342 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 NA | |
IL_8FL9_004 | 1/L1/64:66, 1/L1/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
IL_8FL9_005 | 1/L1/139:141, 1/L3/16:18 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
IL_8FL9_006 | 1/L1/143:144, 1/L3/12:14 | Single bulged U | homologous IL_5TBW_003 NA | |
IL_8FL9_007 | 1/L1/149:151, 1/L3/6:7 | Single bulged C | homologous IL_5TBW_002 NA | |
IL_8FL9_008 | 1/L3/26:27, 1/L3/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
IL_8FL9_009 | 1/L3/30:37, 1/L3/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
IL_8FL9_010 | 1/L3/81:88, 1/L3/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
IL_8FL9_011 | 1/L3/118:122, 1/L3/147:153 | No text annotation | ||
IL_8FL9_012 | 1/L3/125:126, 1/L3/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
IL_8FL9_013 | 1/L3/169:173, 1/L3/263:266 | No text annotation | ||
IL_8FL9_016 | 1/L3/195:196, 1/L3/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
IL_8FL9_017 | 1/L3/199:201, 1/L3/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
IL_8FL9_018 | 1/L3/387:390, 1/L3/401:414 | No text annotation | homologous IL_8P9A_243 IL_44923.1 | |
IL_8FL9_020 | 1/L3/443:446, 1/L3/1300:1304 | No text annotation | geometric IL_7MLW_007 NA | |
IL_8FL9_021 | 1/L3/448:450, 1/L3/1297:1298 | Single bulged C | geometric IL_4C7O_003 NA | |
IL_8FL9_022 | 1/L3/459:460, 1/L3/695:697 | Single bulged C | geometric IL_1S03_006 IL_05642.1 | |
IL_8FL9_023 | 1/L3/462:464, 1/L3/691:693 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
IL_8FL9_024 | 1/L3/466:472, 1/L3/682:689 | No text annotation | ||
IL_8FL9_028 | 1/L3/500:504, 1/L3/654:655 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
IL_8FL9_029 | 1/L3/508:510, 1/L3/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
IL_8FL9_030 | 1/L3/709:710, 1/L3/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
IL_8FL9_031 | 1/L3/723:724, 1/L3/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
IL_8FL9_032 | 1/L3/727:731, 1/L3/938:939 | No text annotation | ||
IL_8FL9_033 | 1/L3/732:735, 1/L3/928:937 | No text annotation | ||
IL_8FL9_034 | 1/L3/737:739, 1/L3/924:926 | No text annotation | geometric IL_5J7L_341 NA | |
IL_8FL9_035 | 1/L3/740:742, 1/L3/922:923 | Single bulged C | geometric IL_7KGA_004 NA | |
IL_8FL9_036 | 1/L3/745:752, 1/L3/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
IL_8FL9_037 | 1/L3/1073:1074, 1/L3/1237:1239 | Single bulged A | geometric IL_2VPL_002 IL_14190.1 | |
IL_8FL9_040 | 1/L3/1086:1087, 1/L3/1209:1211 | Single bulged C | geometric IL_3W3S_001 NA | |
IL_8FL9_043 | 1/L3/1244:1245, 1/L3/1265:1267 | Single bulged G | geometric IL_4V88_442 NA | |
IL_8FL9_044 | 1/L3/1357:1360, 1/L3/1379:1382 | No text annotation | ||
IL_8FL9_169 | 1/L3/1357:1361, 1/L3/1376:1382 | No text annotation | ||
IL_8FL9_045 | 1/L3/1360:1361, 1/L3/1376:1379 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
IL_8FL9_046 | 1/L3/1425:1429, 1/L3/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
IL_8FL9_047 | 1/L3/1431:1434, 1/L3/1450:1453 | Double sheared | geometric IL_7RQB_089 NA | |
IL_8FL9_048 | 1/L3/1467:1468, 1/L3/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
IL_8FL9_049 | 1/L3/1474:1476, 1/L3/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
IL_8FL9_050 | 1/L3/1479:1480, 1/L3/1484:1486 | No text annotation | ||
IL_8FL9_170 | 1/L3/1520:1522, 1/L3/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
IL_8FL9_171 | 1/L3/1522:1526, 1/L3/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
IL_8FL9_052 | 1/L3/1545:1546, 1/L3/1612:1614 | Single bulged A | homologous IL_8C3A_031 NA | |
IL_8FL9_053 | 1/L3/1550:1551, 1/L3/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
IL_8FL9_054 | 1/L3/1551:1555, 1/L3/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
IL_8FL9_055 | 1/L3/1586:1589, 1/L3/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
IL_8FL9_056 | 1/L3/1590:1592, 1/L3/1603:1604 | Single bulged U | geometric IL_7RQB_080 NA | |
IL_8FL9_057 | 1/L3/1624:1626, 1/L3/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
IL_8FL9_058 | 1/L3/1671:1673, 1/L3/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
IL_8FL9_059 | 1/L3/1686:1688, 1/L3/1848:1851 | No text annotation | ||
IL_8FL9_061 | 1/L3/1723:1725, 1/L3/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
IL_8FL9_172 | 1/L3/1732:1737, 1/L3/1792:1797 | No text annotation | ||
IL_8FL9_063 | 1/L3/1814:1816, 1/L3/1823:1824 | Single bulged G | homologous IL_8C3A_048 NA | |
IL_8FL9_173 | 1/L3/1858:1860, 1/L3/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
IL_8FL9_066 | 1/L3/1905:1909, 1/L3/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
IL_8FL9_067 | 1/L3/1911:1918, 1/L3/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
IL_8FL9_068 | 1/L3/1918:1920, 1/L3/2063:2064 | Single bulged G | geometric IL_5TBW_037 NA | |
IL_8FL9_069 | 1/L3/1920:1922, 1/L3/2062:2063 | No text annotation | ||
IL_8FL9_070 | 1/L3/1926:1933, 1/L3/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
IL_8FL9_072 | 1/L3/1946:1948, 1/L3/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
IL_8FL9_073 | 1/L3/1957:1965, 1/L3/2022:2026 | Kink-turn | homologous IL_5TBW_054 NA | |
IL_8FL9_074 | 1/L3/1973:1977, 1/L3/1989:1993 | No text annotation | homologous IL_8C3A_058 NA | |
IL_8FL9_075 | 1/L3/2001:2005, 1/L3/2014:2016 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
IL_8FL9_076 | 1/L3/2083:2085, 1/L3/2272:2273 | No text annotation | ||
IL_8FL9_077 | 1/L3/2290:2292, 1/L3/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
IL_8FL9_078 | 1/L3/2299:2301, 1/L3/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
IL_8FL9_079 | 1/L3/2302:2309, 1/L3/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
IL_8FL9_080 | 1/L3/2312:2314, 1/L3/2325:2326 | Single bulged A | geometric IL_7RQB_033 NA | |
IL_8FL9_174 | 1/L3/2358:2364, 1/L3/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
IL_8FL9_175 | 1/L3/2415:2419, 1/L3/2427:2429 | No text annotation | geometric IL_6CZR_410 NA | |
IL_8FL9_083 | 1/L3/2446:2450, 1/L3/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
IL_8FL9_084 | 1/L3/2542:2547, 1/L3/2772:2774 | No text annotation | geometric IL_6DME_003 IL_75527.1 | |
IL_8FL9_085 | 1/L3/2549:2550, 1/L3/2768:2770 | Single bulged U | geometric IL_5TBW_053 NA | |
IL_8FL9_086 | 1/L3/2589:2593, 1/L3/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
IL_8FL9_087 | 1/L3/2613:2614, 1/L3/2724:2726 | Single bulged C | homologous IL_8C3A_075 NA | |
IL_8FL9_088 | 1/L3/2614:2615, 1/L3/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
IL_8FL9_089 | 1/L3/2646:2648, 1/L3/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
IL_8FL9_090 | 1/L3/2651:2653, 1/L3/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
IL_8FL9_091 | 1/L3/2656:2662, 1/L3/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
IL_8FL9_092 | 1/L3/2704:2705, 1/L3/2710:2712 | No text annotation | ||
IL_8FL9_176 | 1/L3/2832:2838, 1/L3/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
IL_8FL9_177 | 1/L3/2844:2846, 1/L3/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
IL_8FL9_178 | 1/L3/2847:2850, 1/L3/3840:3841 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_74641.1 | |
IL_8FL9_179 | 1/L3/2847:2855, 1/L3/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
IL_8FL9_097 | 1/L3/2850:2855, 1/L3/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
IL_8FL9_098 | 1/L3/2867:2872, 1/L3/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
IL_8FL9_099 | 1/L3/2889:2891, 1/L3/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
IL_8FL9_100 | 1/L3/2896:2897, 1/L3/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
IL_8FL9_101 | 1/L3/2901:2903, 1/L3/3591:3598 | No text annotation | ||
IL_8FL9_104 | 1/L3/3632:3633, 1/L3/3827:3829 | Single bulged A | geometric IL_4V9F_064 IL_14190.1 | |
IL_8FL9_105 | 1/L3/3660:3665, 1/L3/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
IL_8FL9_106 | 1/L3/3700:3703, 1/L3/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
IL_8FL9_107 | 1/L3/3704:3705, 1/L3/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
IL_8FL9_109 | 1/L3/3708:3710, 1/L3/3741:3742 | Stack outside cWW | geometric IL_5WT1_001 IL_78536.1 | |
IL_8FL9_180 | 1/L3/3708:3714, 1/L3/3739:3742 | No text annotation | ||
IL_8FL9_110 | 1/L3/3710:3714, 1/L3/3739:3741 | Other IL | geometric IL_4PDB_001 NA | |
IL_8FL9_181 | 1/L3/3715:3721, 1/L3/3732:3738 | No text annotation | homologous IL_8P9A_316 IL_65359.1 | |
IL_8FL9_113 | 1/L3/3895:3898, 1/L3/4563:4565 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
IL_8FL9_115 | 1/L3/3900:3901, 1/L3/4558:4561 | Major groove platform | geometric IL_4WF9_078 IL_48076.7 | |
IL_8FL9_117 | 1/L3/3913:3915, 1/L3/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
IL_8FL9_118 | 1/L3/3916:3917, 1/L3/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
IL_8FL9_120 | 1/L3/3927:3929, 1/L3/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
IL_8FL9_121 | 1/L3/4082:4088, 1/L3/4161:4164 | No text annotation | homologous IL_5TBW_096 NA | |
IL_8FL9_123 | 1/L3/4191:4192, 1/L3/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
IL_8FL9_124 | 1/L3/4243:4245, 1/L3/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
IL_8FL9_182 | 1/L3/4291:4293, 1/L3/4317:4318 | Single bulged A | geometric IL_7A0S_064 IL_14190.1 | |
IL_8FL9_183 | 1/L3/4295:4298, 1/L3/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
IL_8FL9_127 | 1/L3/4347:4350, 1/L3/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
IL_8FL9_129 | 1/L3/4412:4416, 1/L3/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
IL_8FL9_184 | 1/L3/4456:4458, 1/L3/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
IL_8FL9_131 | 1/L3/4458:4459, 1/L3/4517:4520 | Multiple bulged bases | geometric IL_4V9F_088 IL_44609.1 | |
IL_8FL9_132 | 1/L3/4466:4468, 1/L3/4489:4491 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
IL_8FL9_185 | 1/L3/4466:4470, 1/L3/4485:4491 | No text annotation | ||
IL_8FL9_133 | 1/L3/4468:4470, 1/L3/4485:4489 | No text annotation | geometric IL_3DD2_004 NA | |
IL_8FL9_136 | 1/L3/4537:4538, 1/L3/4547:4549 | Single bulged A | homologous IL_8C3A_122 NA | |
IL_8FL9_139 | 1/L3/4580:4582, 1/L3/4721:4723 | Isolated non-canonical cWW pair | geometric IL_5H1K_001 NA | |
IL_8FL9_140 | 1/L3/4582:4585, 1/L3/4717:4721 | Other IL | geometric IL_4WF9_054 IL_74317.1 | |
IL_8FL9_186 | 1/L3/4590:4592, 1/L3/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.1 | |
IL_8FL9_141 | 1/L3/4596:4603, 1/L3/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
IL_8FL9_187 | 1/L3/4624:4629, 1/L3/4669:4673 | No text annotation | ||
IL_8FL9_188 | 1/L3/4632:4637, 1/L3/4662:4666 | No text annotation | homologous IL_8P9A_346 IL_98200.1 | |
IL_8FL9_144 | 1/L3/4638:4640, 1/L3/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.1 | |
IL_8FL9_145 | 1/L3/4641:4642, 1/L3/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
IL_8FL9_146 | 1/L3/4681:4685, 1/L3/4705:4709 | UAA/GAN | homologous IL_5TBW_120 NA | |
IL_8FL9_147 | 1/L3/4739:4742, 1/L3/4958:4960 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
IL_8FL9_148 | 1/L3/4743:4746, 1/L3/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
IL_8FL9_149 | 1/L3/4749:4751, 1/L3/4948:4951 | No text annotation | ||
IL_8FL9_150 | 1/L3/4756:4765, 1/L3/4869:4877 | No text annotation | ||
IL_8FL9_151 | 1/L3/4769:4771, 1/L3/4863:4865 | Isolated non-canonical cWW pair | geometric IL_3RG5_002 IL_68118.1 | |
IL_8FL9_152 | 1/L3/4885:4889, 1/L3/4930:4934 | Triple non-canonical cWW pairs | geometric IL_8S95_002 NA | |
IL_8FL9_153 | 1/L3/4891:4896, 1/L3/4924:4928 | No text annotation | ||
IL_8FL9_189 | 1/L3/4972:4975, 1/L3/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 NA | |
IL_8FL9_155 | 1/L3/4992:4994, 1/L3/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.1 | |
IL_8FL9_156 | 1/L3/4997:4998, 1/L3/5052:5054 | Major groove intercalation | geometric IL_4WF9_106 IL_78536.1 | |
IL_8FL9_157 | 1/L3/5000:5002, 1/L3/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
IL_8FL9_158 | 1/L3/5003:5009, 1/L3/5039:5044 | No text annotation | ||
IL_8FL9_160 | 1/L3/5012:5014, 1/L3/5035:5036 | Single bulged C | geometric IL_4WF9_035 IL_05642.1 | |
IL_8FL9_161 | 1/L3/5014:5017, 1/L3/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
IL_8FL9_162 | 1/L4/15:16, 1/L4/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
IL_8FL9_163 | 1/L4/21:27, 1/L4/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
IL_8FL9_164 | 1/L4/28:29, 1/L4/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
IL_8FL9_165 | 1/L4/32:36, 1/L4/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
IL_8FL9_166 | 1/L4/71:78, 1/L4/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
IL_8FL9_167 | 1/L4/79:81, 1/L4/95:97 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
IL_8FL9_168 | 1/L4/82:85, 1/L4/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_8FL9_014 | Single bulged C | ||
IL_8FL9_015 | Not an internal loop | ||
IL_8FL9_019 | Isolated non-canonical cWW pair | ||
IL_8FL9_025 | No text annotation | ||
IL_8FL9_026 | Single bulged U | ||
IL_8FL9_027 | Single bulged C | ||
IL_8FL9_038 | No text annotation | ||
IL_8FL9_039 | Isolated near basepair | ||
IL_8FL9_041 | No text annotation | ||
IL_8FL9_042 | Isolated non-canonical cWW pair | ||
IL_8FL9_051 | No text annotation | ||
IL_8FL9_060 | No text annotation | ||
IL_8FL9_062 | No text annotation | ||
IL_8FL9_064 | No text annotation | ||
IL_8FL9_065 | Tandem non-canonical cWW pairs | ||
IL_8FL9_071 | No text annotation | ||
IL_8FL9_081 | Tandem non-canonical cWW pairs | ||
IL_8FL9_082 | No text annotation | ||
IL_8FL9_093 | No text annotation | ||
IL_8FL9_094 | Isolated non-canonical cWW pair | ||
IL_8FL9_095 | No text annotation | ||
IL_8FL9_096 | Major groove platform with extra pair | ||
IL_8FL9_102 | Isolated non-canonical cWW pair | ||
IL_8FL9_103 | Isolated cWH basepair | ||
IL_8FL9_108 | No text annotation | ||
IL_8FL9_111 | No text annotation | ||
IL_8FL9_112 | Stack and bulge | ||
IL_8FL9_114 | Isolated non-canonical cWW pair | ||
IL_8FL9_116 | Stack and bulge | ||
IL_8FL9_119 | Isolated non-canonical cWW pair | ||
IL_8FL9_122 | No text annotation | ||
IL_8FL9_125 | Decoding loop related | ||
IL_8FL9_126 | No text annotation | ||
IL_8FL9_128 | Not an internal loop | ||
IL_8FL9_130 | No text annotation | ||
IL_8FL9_134 | Not an internal loop | ||
IL_8FL9_135 | No text annotation | ||
IL_8FL9_137 | Isolated non-canonical cWW pair | ||
IL_8FL9_138 | Not an internal loop | ||
IL_8FL9_142 | No text annotation | ||
IL_8FL9_143 | Triple sheared related | ||
IL_8FL9_154 | No text annotation | ||
IL_8FL9_159 | Stack and bulge |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_8FL9_013 | 1/L1/19:20, 1/L3/380:387, 1/L3/414:415 | No text annotation | geometric J3_5TBW_002 NA | |
J3_8FL9_014 | 1/L1/19:20, 1/L3/380:390, 1/L3/401:415 | No text annotation | geometric J3_5TBW_062 NA | |
J3_8FL9_015 | 1/L1/21:24, 1/L3/351:367, 1/L3/374:379 | No text annotation | geometric J3_5TBW_061 NA | |
J3_8FL9_016 | 1/L1/44:45, 1/L1/58:64, 1/L1/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
J3_8FL9_001 | 1/L3/112:116, 1/L3/155:160, 1/L3/275:278 | No text annotation | ||
J3_8FL9_017 | 1/L3/196:199, 1/L3/215:228, 1/L3/240:244 | No text annotation | ||
J3_8FL9_018 | 1/L3/451:455, 1/L3/701:705, 1/L3/1292:1296 | No text annotation | ||
J3_8FL9_002 | 1/L3/1531:1537, 1/L3/1622:1624, 1/L3/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
J3_8FL9_003 | 1/L3/1546:1548, 1/L3/1580:1584, 1/L3/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
J3_8FL9_019 | 1/L3/1726:1727, 1/L3/1802:1806, 1/L3/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
J3_8FL9_004 | 1/L3/1969:1971, 1/L3/1995:2001, 1/L3/2016:2018 | No text annotation | homologous J3_5TBW_007 NA | |
J3_8FL9_005 | 1/L3/2393:2399, 1/L3/2805:2807, 1/L3/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
J3_8FL9_006 | 1/L3/2402:2405, 1/L3/2785:2791, 1/L3/2800:2802 | No text annotation | homologous J3_5TBW_009 NA | |
J3_8FL9_020 | 1/L3/2440:2445, 1/L3/2515:2519, 1/L3/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
J3_8FL9_007 | 1/L3/2551:2555, 1/L3/2572:2575, 1/L3/2757:2767 | No text annotation | ||
J3_8FL9_021 | 1/L3/2575:2576, 1/L3/2585:2589, 1/L3/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
J3_8FL9_022 | 1/L3/2598:2602, 1/L3/2737:2738, 1/L3/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
J3_8FL9_008 | 1/L3/3937:3939, 1/L3/4074:4078, 1/L3/4168:4173 | No text annotation | geometric J3_7A0S_009 J3_17460.1 | |
J3_8FL9_023 | 1/L3/4228:4230, 1/L3/4331:4342, 1/L3/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
J3_8FL9_009 | 1/L3/4241:4243, 1/L3/4267:4269, 1/L3/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
J3_8FL9_024 | 1/L3/4463:4466, 1/L3/4491:4493, 1/L3/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
J3_8FL9_025 | 1/L3/4751:4754, 1/L3/4879:4883, 1/L3/4936:4948 | No text annotation | ||
J3_8FL9_026 | 1/L3/4970:4972, 1/L3/4986:4991, 1/L3/5060:5063 | No text annotation | ||
J3_8FL9_027 | 1/L4/9:14, 1/L4/65:66, 1/L4/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
J4_8FL9_001 | 1/L3/111:112, 1/L3/278:283, 1/L3/304:310, 1/L3/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
J4_8FL9_002 | 1/L3/196:199, 1/L3/215:222, 1/L3/226:228, 1/L3/240:244 | No text annotation | ||
J4_8FL9_003 | 1/L3/981:983, 1/L3/1070:1072, 1/L3/1240:1243, 1/L3/1268:1273 | No text annotation | ||
J4_8FL9_010 | 1/L3/2365:2371, 1/L3/2389:2391, 1/L3/2824:2829, 1/L3/3856:3857 | No text annotation | ||
J4_8FL9_005 | 1/L3/2406:2410, 1/L3/2434:2439, 1/L3/2538:2539, 1/L3/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
J4_8FL9_006 | 1/L3/2618:2619, 1/L3/2637:2642, 1/L3/2692:2698, 1/L3/2718:2719 | No text annotation | ||
J4_8FL9_007 | 1/L3/4231:4235, 1/L3/4289:4291, 1/L3/4318:4319, 1/L3/4328:4330 | No text annotation | ||
J4_8FL9_008 | 1/L3/4231:4235, 1/L3/4289:4293, 1/L3/4317:4319, 1/L3/4328:4330 | No text annotation | homologous J4_8P9A_019 J4_59590.1 | |
J4_8FL9_009 | 1/L3/4587:4590, 1/L3/4620:4621, 1/L3/4676:4678, 1/L3/4712:4715 | No text annotation | ||
J5_8FL9_001 | 1/L1/35:42, 1/L1/101:106, 1/L1/113:114, 1/L1/136:138, 1/L3/19:21 | No text annotation | ||
J5_8FL9_002 | 1/L3/1335:1340, 1/L3/1516:1519, 1/L3/1658:1661, 1/L3/2288:2290, 1/L3/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
J5_8FL9_003 | 1/L3/2855:2863, 1/L3/2887:2888, 1/L3/3613:3614, 1/L3/3618:3626, 1/L3/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
J5_8FL9_004 | 1/L3/3920:3923, 1/L3/4188:4191, 1/L3/4204:4205, 1/L3/4227:4228, 1/L3/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
J6_8FL9_001 | 1/L1/33:35, 1/L3/21:26, 1/L3/57:67, 1/L3/74:78, 1/L3/105:109, 1/L3/332:339 | No text annotation | ||
J6_8FL9_002 | 1/L3/1352:1355, 1/L3/1384:1388, 1/L3/1395:1399, 1/L3/1418:1421, 1/L3/1464:1466, 1/L3/1499:1504 | No text annotation | ||
J6_8FL9_003 | 1/L3/3920:3923, 1/L3/4188:4191, 1/L3/4204:4205, 1/L3/4227:4230, 1/L3/4331:4342, 1/L3/4370:4381 | No text annotation | ||
J7_8FL9_001 | 1/L3/1666:1671, 1/L3/1684:1685, 1/L3/1852:1855, 1/L3/1879:1884, 1/L3/1895:1899, 1/L3/2077:2078, 1/L3/2278:2283 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_8FL9_010 | No text annotation | ||
J3_8FL9_011 | No text annotation | ||
J3_8FL9_012 | No text annotation | ||
J4_8FL9_004 | No text annotation |
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