HL_8FL9_009

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8FL9|1|L3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_009 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2333

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8FL9|1|L3|U|204
8FL9|1|L3|C|205
8FL9|1|L3|U|206
8FL9|1|L3|G|207
8FL9|1|L3|A|208
8FL9|1|L3|U|209
8FL9|1|L3|C|210
8FL9|1|L3|G|211

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain LQ

60S ribosomal protein L32