3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GCCUCUCCAGUCCGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FL9_022 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.2368
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

8FL9|1|L3|G|1435
8FL9|1|L3|C|1436
8FL9|1|L3|C|1437
8FL9|1|L3|U|1438
8FL9|1|L3|C|1439
8FL9|1|L3|U|1440
8FL9|1|L3|C|1441
8FL9|1|L3|C|1442
8FL9|1|L3|A|1443
8FL9|1|L3|G|1444
8FL9|1|L3|U|1445
8FL9|1|L3|C|1446
8FL9|1|L3|C|1447
8FL9|1|L3|G|1448
8FL9|1|L3|C|1449

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L18
Chain LM
60S ribosomal protein L29
Chain SA
60S ribosomal protein L4
Chain SD
60S ribosomal protein L7

Coloring options:


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