HL_8FL9_024

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_024 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.197

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FL9|1|L3|G|1561
8FL9|1|L3|G|1562
8FL9|1|L3|A|1563
8FL9|1|L3|A|1564
8FL9|1|L3|A|1565
8FL9|1|L3|C|1566

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L37a