HL_8FL9_039

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8FL9|1|L3|U|2530, 8FL9|1|L3|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_039 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1189

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FL9|1|L3|G|2523
8FL9|1|L3|U|2524
8FL9|1|L3|U|2525
8FL9|1|L3|C|2526
8FL9|1|L3|A|2527
8FL9|1|L3|G|2528
8FL9|1|L3|A|2529
8FL9|1|L3|U|2530
8FL9|1|L3|C|2531
8FL9|1|L3|C|2532

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LH

60S ribosomal protein L23a

Chain LR

60S ribosomal protein L34