HL_8FL9_041

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_041 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.1229

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FL9|1|L3|G|2578
8FL9|1|L3|G|2579
8FL9|1|L3|U|2580
8FL9|1|L3|A|2581
8FL9|1|L3|A|2582
8FL9|1|L3|C|2583

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L27

Chain LR

60S ribosomal protein L34