3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GGUGC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FL9_049 not in the Motif Atlas
Geometric match to HL_6U8D_003
Geometric discrepancy: 0.2294
The information below is about HL_6U8D_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32346.5
Basepair signature
cWW-F
Number of instances in this motif group
10

Unit IDs

8FL9|1|L3|G|3614
8FL9|1|L3|G|3615
8FL9|1|L3|U|3616
8FL9|1|L3|G|3617
8FL9|1|L3|C|3618

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LD
60S ribosomal protein L19
Chain NP
Zinc finger protein 593
Chain SV
Probable ribosome biogenesis protein RLP24

Coloring options:


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