HL_8FL9_051

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8FL9|1|L3|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_051 not in the Motif Atlas

Geometric match to HL_4PQV_001

Geometric discrepancy: 0.3177

The information below is about HL_4PQV_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8FL9|1|L3|C|3668
8FL9|1|L3|G|3669
8FL9|1|L3|C|3670
8FL9|1|L3|G|3671
8FL9|1|L3|G|3672
8FL9|1|L3|C|3673
8FL9|1|L3|G|3674

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain SF

60S ribosomal protein L8