HL_8FL9_053

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGGCGGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_053 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.3942

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8FL9|1|L3|G|3873
8FL9|1|L3|G|3874
8FL9|1|L3|G|3875
8FL9|1|L3|C|3878
8FL9|1|L3|G|3879
8FL9|1|L3|G|3880
8FL9|1|L3|G|3881
8FL9|1|L3|C|3882

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L32