HL_8FLA_027

3D structure

PDB id

8FLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8FLA|1|L3|A|1630, 8FLA|1|L3|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLA_027 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1263

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FLA|1|L3|G|1627
8FLA|1|L3|C|1628
8FLA|1|L3|G|1629
8FLA|1|L3|A|1630
8FLA|1|L3|A|1631
8FLA|1|L3|A|1632
8FLA|1|L3|G|1633
8FLA|1|L3|A|1634
8FLA|1|L3|C|1635

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain LW

60S ribosomal protein L37

Chain SF

60S ribosomal protein L8

Chain SR

GTP-binding protein 4