HL_8FLA_028

3D structure

PDB id

8FLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

8FLA|1|L3|C|1676, 8FLA|1|L3|C|1678, 8FLA|1|L3|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLA_028 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1301

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8FLA|1|L3|C|1675
8FLA|1|L3|C|1676
8FLA|1|L3|PSU|1677
8FLA|1|L3|C|1678
8FLA|1|L3|A|1679
8FLA|1|L3|G|1680

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L27a

Chain LV

60S ribosomal protein L36a