HL_8FLC_002
3D structure
- PDB id
- 8FLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State K3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8FLC|1|L1|A|82, 8FLC|1|L1|U|85
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FLC_002 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.521
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8FLC|1|L1|G|68
8FLC|1|L1|PSU|69
8FLC|1|L1|G|70
8FLC|1|L1|A|71
8FLC|1|L1|A|72
8FLC|1|L1|U|73
8FLC|1|L1|U|74
8FLC|1|L1|OMG|75
8FLC|1|L1|C|76
8FLC|1|L1|A|77
8FLC|1|L1|G|78
8FLC|1|L1|G|79
8FLC|1|L1|A|80
8FLC|1|L1|C|81
8FLC|1|L1|A|82
8FLC|1|L1|C|83
8FLC|1|L1|A|84
8FLC|1|L1|U|85
8FLC|1|L1|U|86
8FLC|1|L1|G|87
8FLC|1|L1|A|88
8FLC|1|L1|U|89
8FLC|1|L1|C|90
Current chains
- Chain L1
- 5.8S rRNA
Nearby chains
- Chain L3
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L26
- Chain LS
- 60S ribosomal protein L35
- Chain LW
- 60S ribosomal protein L37
- Chain LZ
- 60S ribosomal protein L39
- Chain SR
- GTP-binding protein 4
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