HL_8FLC_030

3D structure

PDB id

8FLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8FLC|1|L3|U|1866, 8FLC|1|L3|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLC_030 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3936

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8FLC|1|L3|G|1864
8FLC|1|L3|G|1865
8FLC|1|L3|U|1866
8FLC|1|L3|A|1867
8FLC|1|L3|A|1868
8FLC|1|L3|G|1869
8FLC|1|L3|C|1870

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NR

Translation machinery-associated protein 16

Chain SR

GTP-binding protein 4

Chain VB

Leydig cell tumor 10 kDa protein homolog