HL_8FLD_004

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

8FLD|1|L1|U|127

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLD_004 not in the Motif Atlas

Geometric match to HL_8VTW_051

Geometric discrepancy: 0.3893

The information below is about HL_8VTW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8FLD|1|L1|G|122
8FLD|1|L1|C|125
8FLD|1|L1|C|126
8FLD|1|L1|U|127
8FLD|1|L1|C|128

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain L3

Large subunit ribosomal RNA; LSU rRNA

Chain LH

60S ribosomal protein L23a

Chain NL

Ribosome biogenesis protein NOP53

Chain SM

Pescadillo homolog