HL_8FLD_063
3D structure
- PDB id
- 8FLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State L1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 8FLD|1|L3|U|4354
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FLD_063 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.5123
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8FLD|1|L3|U|4352
8FLD|1|L3|PSU|4353
8FLD|1|L3|U|4354
8FLD|1|L3|G|4355
8FLD|1|L3|G|4356
8FLD|1|L3|G|4357
8FLD|1|L3|U|4358
8FLD|1|L3|U|4359
8FLD|1|L3|U|4360
8FLD|1|L3|PSU|4361
8FLD|1|L3|A|4362
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain LK
- 60S ribosomal protein L27a
- Chain LU
- 60S ribosomal protein L36
- Chain LV
- 60S ribosomal protein L36a
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