HL_8FLD_064

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

8FLD|1|L3|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLD_064 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1345

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8FLD|1|L3|A|4473
8FLD|1|L3|A|4474
8FLD|1|L3|G|4475
8FLD|1|L3|C|4476
8FLD|1|L3|A|4477
8FLD|1|L3|G|4478
8FLD|1|L3|A|4479
8FLD|1|L3|A|4480
8FLD|1|L3|U|4481
8FLD|1|L3|U|4482

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L23

Chain SG

60S ribosomal protein L9