HL_8FLF_012

3D structure

PDB id

8FLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8FLF|1|L3|G|294, 8FLF|1|L3|A|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLF_012 not in the Motif Atlas

Homologous match to HL_8P9A_120

Geometric discrepancy: 0.3819

The information below is about HL_8P9A_120

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8FLF|1|L3|C|289
8FLF|1|L3|U|290
8FLF|1|L3|U|291
8FLF|1|L3|G|292
8FLF|1|L3|G|293
8FLF|1|L3|G|294
8FLF|1|L3|A|295
8FLF|1|L3|A|296
8FLF|1|L3|U|297
8FLF|1|L3|G|298

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain L9

60S ribosomal protein L15

Chain LK

60S ribosomal protein L27a

Chain LV

60S ribosomal protein L36a