HL_8P9A_120

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8P9A|1|AR|G|283, 8P9A|1|AR|A|284, 8P9A|1|AR|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8P9A|1|AR|U|278
8P9A|1|AR|U|279
8P9A|1|AR|U|280
8P9A|1|AR|G|281
8P9A|1|AR|G|282
8P9A|1|AR|G|283
8P9A|1|AR|A|284
8P9A|1|AR|A|285
8P9A|1|AR|U|286
8P9A|1|AR|G|287

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain CP

60S ribosomal protein L15-A

Chain DC

60S ribosomal protein L28

Chain DQ

60S ribosomal protein L42-A