HL_8FOM_041

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8FOM|1|RA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_041 not in the Motif Atlas

Geometric match to HL_7A0S_006

Geometric discrepancy: 0.0926

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8FOM|1|RA|G|194
8FOM|1|RA|A|195
8FOM|1|RA|A|196
8FOM|1|RA|A|197
8FOM|1|RA|C|198
8FOM|1|RA|A|199
8FOM|1|RA|U|200
8FOM|1|RA|C|201

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15