HL_8FOM_069

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

8FOM|1|RA|G|1325, 8FOM|1|RA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_069 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.0716

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8FOM|1|RA|G|1324
8FOM|1|RA|G|1325
8FOM|1|RA|U|1326
8FOM|1|RA|C|1327
8FOM|1|RA|G|1328
8FOM|1|RA|U|1329
8FOM|1|RA|C|1330

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RW

50S ribosomal protein L22