HL_8FOM_091

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_091 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.3571

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8FOM|1|RA|G|2303
8FOM|1|RA|G|2304
8FOM|1|RA|A|2305
8FOM|1|RA|C|2306
8FOM|1|RA|G|2307
8FOM|1|RA|G|2308
8FOM|1|RA|A|2309
8FOM|1|RA|A|2310
8FOM|1|RA|A|2311
8FOM|1|RA|U|2312
8FOM|1|RA|C|2313

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RG

50S ribosomal protein L5