HL_8FOM_097

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

8FOM|1|RA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_097 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0915

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8FOM|1|RA|U|2528
8FOM|1|RA|G|2529
8FOM|1|RA|A|2530
8FOM|1|RA|A|2531
8FOM|1|RA|G|2532
8FOM|1|RA|A|2533
8FOM|1|RA|A|2534
8FOM|1|RA|G|2535

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6