HL_8FOM_098

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_098 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1219

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8FOM|1|RA|C|2551
8FOM|1|RA|U|2552
8FOM|1|RA|G|2553
8FOM|1|RA|U|2554
8FOM|1|RA|U|2555
8FOM|1|RA|C|2556
8FOM|1|RA|G|2557

Current chains

Chain RA

23S rRNA

Nearby chains

Chain Z6

CC-puro