HL_8FOM_140

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAGGG(H2U)AG

Length

8 nucleotides

Bulged bases

8FOM|1|XV|G|18, 8FOM|1|XV|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_140 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.2162

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FOM|1|XV|C|13
8FOM|1|XV|A|14
8FOM|1|XV|G|15
8FOM|1|XV|G|18
8FOM|1|XV|G|19
8FOM|1|XV|H2U|20
8FOM|1|XV|A|21
8FOM|1|XV|G|22

Current chains

Chain XV

P-site tRNA^Lys(SUU)

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YG

50S ribosomal protein L5