HL_8FOM_150

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

8FOM|1|YA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_150 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.2035

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8FOM|1|YA|A|225
8FOM|1|YA|G|226
8FOM|1|YA|A|227
8FOM|1|YA|A|228
8FOM|1|YA|A|229
8FOM|1|YA|U|230

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YP

50S ribosomal protein L15