HL_8FOM_153

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

8FOM|1|YA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_153 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1356

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8FOM|1|YA|U|305
8FOM|1|YA|U|306
8FOM|1|YA|G|307
8FOM|1|YA|G|308
8FOM|1|YA|G|309
8FOM|1|YA|A|310
8FOM|1|YA|A|311
8FOM|1|YA|G|312

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YY

50S ribosomal protein L24