HL_8FOM_188

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_188 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.2894

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

8FOM|1|YA|U|1727
8FOM|1|YA|G|1728
8FOM|1|YA|A|1729
8FOM|1|YA|U|1730
8FOM|1|YA|G|1731
8FOM|1|YA|A|1732
8FOM|1|YA|G|1733

Current chains

Chain YA

23S rRNA

Nearby chains