HL_8FOM_197

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

8FOM|1|YA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_197 not in the Motif Atlas

Homologous match to HL_8VTW_051

Geometric discrepancy: 0.3798

The information below is about HL_8VTW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8FOM|1|YA|C|2209
8FOM|1|YA|G|2210
8FOM|1|YA|G|2211
8FOM|1|YA|A|2212
8FOM|1|YA|U|2213
8FOM|1|YA|G|2215

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YD

50S ribosomal protein L2

Chain YI

50S ribosomal protein L9