HL_8FOM_220

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

8FOM|1|RA|U|270|||L, 8FOM|1|RA|U|270|||O

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_220 not in the Motif Atlas

Homologous match to HL_9DFE_008

Geometric discrepancy: 0.501

The information below is about HL_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FOM|1|RA|G|270|||J
8FOM|1|RA|C|270|||K
8FOM|1|RA|U|270|||L
8FOM|1|RA|U|270|||M
8FOM|1|RA|G|270|||N
8FOM|1|RA|U|270|||O
8FOM|1|RA|C|270|||P

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9