HL_8FON_025

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8FON|1|QA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1922

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8FON|1|QA|G|1089
8FON|1|QA|U|1090
8FON|1|QA|U|1091
8FON|1|QA|A|1092
8FON|1|QA|A|1093
8FON|1|QA|G|1094
8FON|1|QA|U|1095
8FON|1|QA|C|1096

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QG

30S ribosomal protein S7