HL_8FON_034

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

AUU(MNU)UU(T6A)AU

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MNU, T6A

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_034 not in the Motif Atlas

Homologous match to HL_4V90_033

Geometric discrepancy: 0.1646

The information below is about HL_4V90_033

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8FON|1|QV|A|31
8FON|1|QV|U|32
8FON|1|QV|U|33
8FON|1|QV|MNU|34
8FON|1|QV|U|35
8FON|1|QV|U|36
8FON|1|QV|T6A|37
8FON|1|QV|A|38
8FON|1|QV|U|39

Current chains

Chain QV

P-site tRNA^Lys(SUU)

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QI

30S ribosomal protein S9

Chain QX

mRNA