HL_8FON_090

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

8FON|1|RA|A|2268, 8FON|1|RA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_090 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0937

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8FON|1|RA|C|2264
8FON|1|RA|U|2265
8FON|1|RA|A|2266
8FON|1|RA|A|2267
8FON|1|RA|A|2268
8FON|1|RA|A|2269
8FON|1|RA|G|2270
8FON|1|RA|G|2271
8FON|1|RA|U|2272
8FON|1|RA|A|2273
8FON|1|RA|A|2274
8FON|1|RA|C|2275
8FON|1|RA|G|2276

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16