HL_8FON_193

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8FON|1|YA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_193 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1695

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8FON|1|YA|G|1949
8FON|1|YA|G|1950
8FON|1|YA|U|1951
8FON|1|YA|A|1952
8FON|1|YA|A|1953
8FON|1|YA|G|1954
8FON|1|YA|U|1955
8FON|1|YA|U|1956
8FON|1|YA|C|1957

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YO

50S ribosomal protein L14