HL_8FON_223

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

8FON|1|YA|G|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_223 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.3361

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8FON|1|YA|G|2304
8FON|1|YA|A|2305
8FON|1|YA|C|2306
8FON|1|YA|G|2307
8FON|1|YA|G|2308
8FON|1|YA|A|2309
8FON|1|YA|A|2310
8FON|1|YA|A|2311
8FON|1|YA|U|2312

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YG

50S ribosomal protein L5