HL_8FR8_006

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8FR8|1|A|A|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.1061

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8FR8|1|A|G|193
8FR8|1|A|A|194
8FR8|1|A|A|195
8FR8|1|A|A|196
8FR8|1|A|C|197
8FR8|1|A|A|198
8FR8|1|A|U|199
8FR8|1|A|C|200

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain V

50S ribosomal protein L15

Chain y

50S ribosomal protein L28