HL_8FR8_028

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

8FR8|1|A|C|1002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_028 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2612

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8FR8|1|A|C|1001
8FR8|1|A|C|1002
8FR8|1|A|A|1003
8FR8|1|A|C|1004
8FR8|1|A|A|1005
8FR8|1|A|G|1006

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain I

GTP pyrophosphokinase RelA

Chain j

30S ribosomal protein S13