HL_8FR8_029

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

8FR8|1|A|U|1075, 8FR8|1|A|G|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_029 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1431

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8FR8|1|A|G|1072
8FR8|1|A|G|1073
8FR8|1|A|A|1074
8FR8|1|A|U|1075
8FR8|1|A|A|1076
8FR8|1|A|A|1077
8FR8|1|A|G|1078
8FR8|1|A|C|1079

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 3

50S ribosomal protein eL31

Chain N

50S ribosomal protein L16