HL_8FR8_032

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_032 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.4334

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8FR8|1|A|C|1210
8FR8|1|A|G|1211
8FR8|1|A|U|1212
8FR8|1|A|A|1213
8FR8|1|A|A|1214
8FR8|1|A|U|1215
8FR8|1|A|A|1216
8FR8|1|A|G|1217

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain F

50S ribosomal protein L36

Chain P

50S ribosomal protein L6

Chain S

50S ribosomal protein L11