HL_8FR8_058

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8FR8|1|A|A|2492, 8FR8|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_058 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1004

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8FR8|1|A|C|2488
8FR8|1|A|U|2489
8FR8|1|A|A|2490
8FR8|1|A|A|2491
8FR8|1|A|A|2492
8FR8|1|A|A|2493
8FR8|1|A|U|2494
8FR8|1|A|G|2495
8FR8|1|A|U|2496
8FR8|1|A|A|2497
8FR8|1|A|A|2498
8FR8|1|A|C|2499
8FR8|1|A|G|2500

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 4

50S ribosomal protein L27

Chain N

50S ribosomal protein L16